RNA–Protein interactions for RNA: ENST00000375329.6

APOA1-205, Transcript of apolipoprotein A1, humanhuman

TSL 2 BASIC

Gene APOA1, Length 927 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOA1-205ENST00000375329 NISCHQ9Y2I1 1504 aa37.52■■■■□ 3.6
APOA1-205ENST00000375329 CCDC180Q9P1Z9 1646 aa33.48■■■□□ 2.95
APOA1-205ENST00000375329 ABCC9O60706 1549 aa32.86■■■□□ 2.85
APOA1-205ENST00000375329 RB1CC1Q8TDY2 1594 aa31.61■■■□□ 2.65
APOA1-205ENST00000375329 NACADO15069 1562 aa31.54■■■□□ 2.64
APOA1-205ENST00000375329 DCAF8L2P0C7V8 631 aa31.47■■■□□ 2.63
APOA1-205ENST00000375329 MYO15BQ96JP2 1530 aa31.3■■■□□ 2.6
APOA1-205ENST00000375329 ZCCHC6Q5VYS8 1495 aaKnown RBP31.2■■■□□ 2.58
APOA1-205ENST00000375329 DCAF1Q9Y4B6 1507 aa31.08■■■□□ 2.57
APOA1-205ENST00000375329 UNC13AQ9UPW8 1703 aa30.81■■■□□ 2.52
APOA1-205ENST00000375329 PABPN1Q86U42 306 aaKnown RBP eCLIP30.68■■■□□ 2.5
APOA1-205ENST00000375329 DNAJC5BQ9UF47 199 aa30.65■■■□□ 2.5
APOA1-205ENST00000375329 BICRAQ9NZM4 1560 aa30.55■■■□□ 2.48
APOA1-205ENST00000375329 SCRIBQ14160 1630 aa30.45■■■□□ 2.47
APOA1-205ENST00000375329 SHROOM4Q9ULL8 1493 aa30.37■■■□□ 2.45
APOA1-205ENST00000375329 EIF4G1Q04637 1599 aaKnown RBP29.81■■■□□ 2.36
APOA1-205ENST00000375329 CC2D2AQ9P2K1 1620 aa29.73■■■□□ 2.35
APOA1-205ENST00000375329 CECR2Q9BXF3 1484 aa29.58■■■□□ 2.33
APOA1-205ENST00000375329 SMARCA4P51532 1647 aa29.15■■■□□ 2.26
APOA1-205ENST00000375329 BAZ1AQ9NRL2 1556 aaPredicted RBP29.13■■■□□ 2.25
APOA1-205ENST00000375329 NCAPD3P42695 1498 aa29.08■■■□□ 2.25
APOA1-205ENST00000375329 SMARCA2P51531 1590 aa29.05■■■□□ 2.24
APOA1-205ENST00000375329 ATAD2BQ9ULI0 1458 aa29.04■■■□□ 2.24
APOA1-205ENST00000375329 HMGXB3Q12766 1538 aa28.92■■■□□ 2.22
APOA1-205ENST00000375329 PEG3Q9GZU2 1588 aa28.88■■■□□ 2.21
APOA1-205ENST00000375329 MROH2BQ7Z745 1585 aa28.87■■■□□ 2.21
APOA1-205ENST00000375329 BAZ1BQ9UIG0 1483 aaKnown RBP28.82■■■□□ 2.2
APOA1-205ENST00000375329 WIZO95785 1651 aa28.55■■■□□ 2.16
APOA1-205ENST00000375329 RSF1Q96T23 1441 aaPredicted RBP28.51■■■□□ 2.15
APOA1-205ENST00000375329 ERCC6Q03468 1493 aa28.41■■■□□ 2.14
APOA1-205ENST00000375329 LAMC3Q9Y6N6 1575 aa28.36■■■□□ 2.13
APOA1-205ENST00000375329 NESP48681 1621 aa28.35■■■□□ 2.13
APOA1-205ENST00000375329 DNAJC5Q9H3Z4 198 aa28.32■■■□□ 2.12
APOA1-205ENST00000375329 TOP2AP11388 1531 aaKnown RBP28.28■■■□□ 2.12
APOA1-205ENST00000375329 CADPSQ9ULU8 1353 aa28.24■■■□□ 2.11
APOA1-205ENST00000375329 PDS5BQ9NTI5 1447 aa28.21■■■□□ 2.11
APOA1-205ENST00000375329 CUX2O14529 1486 aa28.21■■■□□ 2.11
APOA1-205ENST00000375329 KIF21AQ7Z4S6 1674 aa28.04■■■□□ 2.08
APOA1-205ENST00000375329 CFTRP13569 1480 aa28.01■■■□□ 2.07
APOA1-205ENST00000375329 THOC2Q8NI27 1593 aaKnown RBP27.98■■■□□ 2.07
APOA1-205ENST00000375329 CCDC88BA6NC98 1476 aa27.94■■■□□ 2.06
APOA1-205ENST00000375329 FANCD2Q9BXW9 1451 aa27.89■■■□□ 2.05
APOA1-205ENST00000375329 CEP164Q9UPV0 1460 aa27.89■■■□□ 2.05
APOA1-205ENST00000375329 MRC2Q9UBG0 1479 aa27.87■■■□□ 2.05
APOA1-205ENST00000375329 PRDM2Q13029 1718 aa27.81■■■□□ 2.04
APOA1-205ENST00000375329 WDR62O43379 1518 aa27.77■■■□□ 2.04
APOA1-205ENST00000375329 SUPT5HO00267 1087 aaKnown RBP27.68■■■□□ 2.02
APOA1-205ENST00000375329 URB2Q14146 1524 aaKnown RBP27.57■■■□□ 2
APOA1-205ENST00000375329 ABCC8Q09428 1581 aa27.5■■□□□ 1.99
APOA1-205ENST00000375329 TOPBP1Q92547 1522 aa27.41■■□□□ 1.98
APOA1-205ENST00000375329 DNMBPQ6XZF7 1577 aa27.38■■□□□ 1.97
APOA1-205ENST00000375329 IFT140Q96RY7 1462 aa27.32■■□□□ 1.96
APOA1-205ENST00000375329 TRIM41Q8WV44 630 aa27.26■■□□□ 1.95
APOA1-205ENST00000375329 POLA1P09884 1462 aaPredicted RBP27.15■■□□□ 1.94
APOA1-205ENST00000375329 ZNF608Q9ULD9 1512 aaPredicted RBP27.12■■□□□ 1.93
APOA1-205ENST00000375329 CUX1P39880 1505 aa27.11■■□□□ 1.93
APOA1-205ENST00000375329 TARBP1Q13395 1621 aaKnown RBP27.1■■□□□ 1.93
APOA1-205ENST00000375329 SOGA1O94964 1423 aa27.08■■□□□ 1.93
APOA1-205ENST00000375329 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
APOA1-205ENST00000375329 EIF4G3O43432 1585 aaKnown RBP27.03■■□□□ 1.92
APOA1-205ENST00000375329 OSCARQ8IYS5 282 aa27.02■■□□□ 1.92
APOA1-205ENST00000375329 RAD54L2Q9Y4B4 1467 aa27.01■■□□□ 1.91
APOA1-205ENST00000375329 AQRO60306 1485 aaKnown RBP eCLIP26.98■■□□□ 1.911e-12■■■■■ 43.8
APOA1-205ENST00000375329 WDR97A6NE52 1622 aa26.98■■□□□ 1.91
APOA1-205ENST00000375329 WRNQ14191 1432 aaPredicted RBP eCLIP26.92■■□□□ 1.9
APOA1-205ENST00000375329 TDRD9Q8NDG6 1382 aaKnown RBP26.92■■□□□ 1.9
APOA1-205ENST00000375329 TOP2BQ02880 1626 aa26.87■■□□□ 1.89
APOA1-205ENST00000375329 BIVM-ERCC5R4GMW8 1640 aa26.85■■□□□ 1.89
APOA1-205ENST00000375329 ABCA10Q8WWZ4 1543 aa26.82■■□□□ 1.88
APOA1-205ENST00000375329 GRIN2BQ13224 1484 aa26.8■■□□□ 1.88
APOA1-205ENST00000375329 SYNJ1O43426 1573 aa26.79■■□□□ 1.88
APOA1-205ENST00000375329 GAPVD1Q14C86 1478 aa26.76■■□□□ 1.87
APOA1-205ENST00000375329 FBLN2P98095 1184 aa26.76■■□□□ 1.87
APOA1-205ENST00000375329 RIMBP3CA6NJZ7 1639 aa26.76■■□□□ 1.87
APOA1-205ENST00000375329 RIMBP3BA6NNM3 1639 aa26.76■■□□□ 1.87
APOA1-205ENST00000375329 RIMBP3Q9UFD9 1639 aa26.76■■□□□ 1.87
APOA1-205ENST00000375329 MAGI1Q96QZ7 1491 aaPredicted RBP26.75■■□□□ 1.87
APOA1-205ENST00000375329 CHD1O14646 1710 aa26.73■■□□□ 1.87
APOA1-205ENST00000375329 SNAPC4Q5SXM2 1469 aa26.73■■□□□ 1.87
APOA1-205ENST00000375329 ABCA5Q8WWZ7 1642 aa26.69■■□□□ 1.86
APOA1-205ENST00000375329 CHMP7Q8WUX9 453 aaPredicted RBP26.69■■□□□ 1.86
APOA1-205ENST00000375329 PBRM1Q86U86 1689 aa26.69■■□□□ 1.86
APOA1-205ENST00000375329 SYNJ2O15056 1496 aa26.63■■□□□ 1.85
APOA1-205ENST00000375329 ARHGEF11O15085 1522 aa26.54■■□□□ 1.84
APOA1-205ENST00000375329 ERICH3Q5RHP9 1530 aa26.52■■□□□ 1.84
APOA1-205ENST00000375329 FHAD1B1AJZ9 1412 aa26.46■■□□□ 1.83
APOA1-205ENST00000375329 ADAMTS12P58397 1594 aa26.46■■□□□ 1.83
APOA1-205ENST00000375329 CLASP1Q7Z460 1538 aa26.44■■□□□ 1.82
APOA1-205ENST00000375329 GRIN2AQ12879 1464 aa26.42■■□□□ 1.82
APOA1-205ENST00000375329 KIF27Q86VH2 1401 aa26.41■■□□□ 1.82
APOA1-205ENST00000375329 NUP160Q12769 1436 aa26.31■■□□□ 1.8
APOA1-205ENST00000375329 CYB5RLQ6IPT4 315 aa26.3■■□□□ 1.8
APOA1-205ENST00000375329 IGF1RP08069 1367 aa26.28■■□□□ 1.8
APOA1-205ENST00000375329 CUL7Q14999 1698 aa26.25■■□□□ 1.79
APOA1-205ENST00000375329 CEP170Q5SW79 1584 aa26.24■■□□□ 1.79
APOA1-205ENST00000375329 ARAP1Q96P48 1450 aa26.24■■□□□ 1.79
APOA1-205ENST00000375329 CARMIL1Q5VZK9 1371 aa26.15■■□□□ 1.78
APOA1-205ENST00000375329 SHROOM2Q13796 1616 aa26.12■■□□□ 1.77
APOA1-205ENST00000375329 TRHP20396 242 aaPredicted RBP26.11■■□□□ 1.77
APOA1-205ENST00000375329 JPH4Q96JJ6 628 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms