Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.9■□□□□ 0.46
MSH4O15457 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
MSH4O15457 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.89■□□□□ 0.46
MSH4O15457 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.89■□□□□ 0.46
MSH4O15457 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
MSH4O15457 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
MSH4O15457 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
MSH4O15457 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
MSH4O15457 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 SPDYE19P-201ENST00000338590 713 ntBASIC17.89■□□□□ 0.45
MSH4O15457 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.89■□□□□ 0.45
MSH4O15457 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.89■□□□□ 0.45
MSH4O15457 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.89■□□□□ 0.45
MSH4O15457 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
MSH4O15457 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 AP003680.1-201ENST00000598970 3660 ntBASIC17.89■□□□□ 0.45
MSH4O15457 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
MSH4O15457 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.89■□□□□ 0.45
MSH4O15457 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
MSH4O15457 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
MSH4O15457 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.88■□□□□ 0.45
MSH4O15457 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.88■□□□□ 0.45
MSH4O15457 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.88■□□□□ 0.45
MSH4O15457 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.88■□□□□ 0.45
MSH4O15457 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
MSH4O15457 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
MSH4O15457 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
MSH4O15457 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH4O15457 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.88■□□□□ 0.45
MSH4O15457 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
MSH4O15457 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.87■□□□□ 0.45
MSH4O15457 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.87■□□□□ 0.45
MSH4O15457 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MSH4O15457 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.87■□□□□ 0.45
MSH4O15457 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH4O15457 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
MSH4O15457 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.87■□□□□ 0.45
MSH4O15457 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
MSH4O15457 AC004233.3-201ENST00000607794 1269 ntBASIC17.87■□□□□ 0.45
MSH4O15457 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms