Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LDB3O75112 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
LDB3O75112 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.17■□□□□ 0.02
LDB3O75112 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LDB3O75112 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LDB3O75112 LINC02447-202ENST00000501888 2146 ntBASIC15.17■□□□□ 0.02
LDB3O75112 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.17■□□□□ 0.02
LDB3O75112 CDC14C-201ENST00000428251 1719 ntBASIC15.17■□□□□ 0.02
LDB3O75112 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LDB3O75112 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LDB3O75112 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
LDB3O75112 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.17■□□□□ 0.02
LDB3O75112 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.17■□□□□ 0.02
LDB3O75112 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.17■□□□□ 0.02
LDB3O75112 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.17■□□□□ 0.02
LDB3O75112 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LDB3O75112 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.16■□□□□ 0.02
LDB3O75112 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.16■□□□□ 0.02
LDB3O75112 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.16■□□□□ 0.02
LDB3O75112 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 MTND6P24-201ENST00000440466 518 ntBASIC15.16■□□□□ 0.02
LDB3O75112 CNN2P2-201ENST00000443536 909 ntBASIC15.16■□□□□ 0.02
LDB3O75112 CNN2P3-201ENST00000450201 906 ntBASIC15.16■□□□□ 0.02
LDB3O75112 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.16■□□□□ 0.02
LDB3O75112 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.16■□□□□ 0.02
LDB3O75112 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.16■□□□□ 0.02
LDB3O75112 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.16■□□□□ 0.02
LDB3O75112 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.16■□□□□ 0.02
LDB3O75112 AC007967.4-201ENST00000614700 386 ntBASIC15.16■□□□□ 0.02
LDB3O75112 AL136317.3-201ENST00000618497 906 ntBASIC15.16■□□□□ 0.02
LDB3O75112 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.16■□□□□ 0.02
LDB3O75112 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.16■□□□□ 0.02
LDB3O75112 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.16■□□□□ 0.02
LDB3O75112 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.16■□□□□ 0.02
LDB3O75112 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
LDB3O75112 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.16■□□□□ 0.02
LDB3O75112 TUBB3P1-201ENST00000405796 1332 ntBASIC15.16■□□□□ 0.02
LDB3O75112 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
LDB3O75112 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
LDB3O75112 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.15■□□□□ 0.02
LDB3O75112 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.15■□□□□ 0.02
LDB3O75112 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LDB3O75112 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LDB3O75112 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
LDB3O75112 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.15■□□□□ 0.02
LDB3O75112 AL139010.1-201ENST00000454878 894 ntBASIC15.15■□□□□ 0.02
LDB3O75112 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.15■□□□□ 0.02
LDB3O75112 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.15■□□□□ 0.02
LDB3O75112 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.15■□□□□ 0.02
LDB3O75112 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.15■□□□□ 0.02
LDB3O75112 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 RN7SL828P-201ENST00000607615 303 ntBASIC15.15■□□□□ 0.02
LDB3O75112 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 AL691432.1-201ENST00000596308 1422 ntBASIC15.15■□□□□ 0.02
LDB3O75112 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LDB3O75112 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.15■□□□□ 0.02
LDB3O75112 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms