Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VIMP08670 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
VIMP08670 BANP-203ENST00000393207 2438 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
VIMP08670 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 AL592424.1-201ENST00000563624 1536 ntBASIC16.31■□□□□ 0.2
VIMP08670 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC16.31■□□□□ 0.2
VIMP08670 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 AL590787.1-201ENST00000568856 1315 ntBASIC16.31■□□□□ 0.2
VIMP08670 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 AL137013.1-201ENST00000432946 1228 ntBASIC16.31■□□□□ 0.2
VIMP08670 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.31■□□□□ 0.2
VIMP08670 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.31■□□□□ 0.2
VIMP08670 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.31■□□□□ 0.2
VIMP08670 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.31■□□□□ 0.2
VIMP08670 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.31■□□□□ 0.2
VIMP08670 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VIMP08670 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.3■□□□□ 0.2
VIMP08670 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
VIMP08670 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VIMP08670 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VIMP08670 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.3■□□□□ 0.2
VIMP08670 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
VIMP08670 AC087499.1-201ENST00000418141 1075 ntBASIC16.3■□□□□ 0.2
VIMP08670 AC112907.2-201ENST00000448639 330 ntBASIC16.3■□□□□ 0.2
VIMP08670 KRT18P38-201ENST00000449496 1282 ntBASIC16.3■□□□□ 0.2
VIMP08670 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.3■□□□□ 0.2
VIMP08670 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VIMP08670 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VIMP08670 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VIMP08670 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VIMP08670 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.29■□□□□ 0.2
VIMP08670 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 AC007191.1-201ENST00000623179 2995 ntBASIC16.29■□□□□ 0.2
VIMP08670 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC16.29■□□□□ 0.2
VIMP08670 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VIMP08670 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VIMP08670 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms