Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 AC005089.1-201ENST00000619486 2241 ntBASIC11.88□□□□□ -0.51
SMKR1H3BMG3 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 GSN-215ENST00000545652 2428 ntTSL 2 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 RDX-218ENST00000544551 4117 ntTSL 2 BASIC11.88□□□□□ -0.51
SMKR1H3BMG3 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 AC246785.2-201ENST00000432512 513 ntBASIC11.87□□□□□ -0.51
SMKR1H3BMG3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 VENTXP7-201ENST00000475503 772 ntBASIC11.87□□□□□ -0.51
SMKR1H3BMG3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ABR-217ENST00000572441 563 ntTSL 4 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 AC007292.2-201ENST00000593524 1812 ntBASIC11.87□□□□□ -0.51
SMKR1H3BMG3 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 AC117489.1-201ENST00000625169 3217 ntBASIC11.87□□□□□ -0.51
SMKR1H3BMG3 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 PPP1R26P4-201ENST00000619065 3527 ntBASIC11.87□□□□□ -0.51
SMKR1H3BMG3 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
SMKR1H3BMG3 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 AC131009.4-201ENST00000624048 1740 ntBASIC11.86□□□□□ -0.51
SMKR1H3BMG3 INTS4P1-201ENST00000438455 1935 ntBASIC11.86□□□□□ -0.51
SMKR1H3BMG3 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CELP-203ENST00000624767 2414 ntTSL 5 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 USP28-214ENST00000545540 3431 ntTSL 2 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC11.86□□□□□ -0.51
SMKR1H3BMG3 RNF152P1-201ENST00000397754 604 ntBASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms