Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM38O00635 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM38O00635 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.34■□□□□ 0.21
TRIM38O00635 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM38O00635 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 TSPY26P-202ENST00000565928 3884 ntBASIC16.34■□□□□ 0.21
TRIM38O00635 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM38O00635 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM38O00635 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM38O00635 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.33■□□□□ 0.21
TRIM38O00635 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM38O00635 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM38O00635 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM38O00635 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM38O00635 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM38O00635 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
TRIM38O00635 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM38O00635 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
TRIM38O00635 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM38O00635 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM38O00635 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM38O00635 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 AC097493.3-201ENST00000509725 367 ntBASIC16.33■□□□□ 0.2
TRIM38O00635 AL138918.1-201ENST00000568306 659 ntBASIC16.33■□□□□ 0.2
TRIM38O00635 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.33■□□□□ 0.2
TRIM38O00635 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM38O00635 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM38O00635 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM38O00635 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM38O00635 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM38O00635 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM38O00635 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
TRIM38O00635 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM38O00635 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRIM38O00635 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM38O00635 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM38O00635 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM38O00635 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 AL645728.1-201ENST00000366221 2101 ntBASIC16.32■□□□□ 0.2
TRIM38O00635 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRIM38O00635 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM38O00635 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.32■□□□□ 0.2
TRIM38O00635 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM38O00635 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 AC069120.2-201ENST00000524091 540 ntBASIC16.32■□□□□ 0.2
TRIM38O00635 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM38O00635 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM38O00635 MPDU1-223ENST00000582151 728 ntBASIC16.32■□□□□ 0.2
TRIM38O00635 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.32■□□□□ 0.2
TRIM38O00635 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 LINC02560-201ENST00000596379 459 ntBASIC16.32■□□□□ 0.2
TRIM38O00635 AL158211.3-201ENST00000607385 239 ntBASIC16.32■□□□□ 0.2
TRIM38O00635 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRIM38O00635 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM38O00635 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms