RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 NISCHQ9Y2I1 1504 aa30.25■■■□□ 2.43
PCDH1-203ENST00000394536 SHROOM4Q9ULL8 1493 aa27.85■■■□□ 2.05
PCDH1-203ENST00000394536 SUPT5HO00267 1087 aaKnown RBP27.81■■■□□ 2.04
PCDH1-203ENST00000394536 DCAF8L2P0C7V8 631 aa27.8■■■□□ 2.04
PCDH1-203ENST00000394536 PCGF6Q9BYE7 350 aa26.53■■□□□ 1.84
PCDH1-203ENST00000394536 EHMT2Q96KQ7 1210 aa26.26■■□□□ 1.79
PCDH1-203ENST00000394536 CHIC1Q5VXU3 224 aa26.17■■□□□ 1.78
PCDH1-203ENST00000394536 HRCP23327 699 aa26.01■■□□□ 1.75
PCDH1-203ENST00000394536 FAM9AQ8IZU1 332 aaPredicted RBP25.97■■□□□ 1.75
PCDH1-203ENST00000394536 LOC105371045A0A1W2PR82 267 aa25.94■■□□□ 1.74
PCDH1-203ENST00000394536 PPARGC1BQ86YN6 1023 aaKnown RBP25.85■■□□□ 1.73
PCDH1-203ENST00000394536 TRIM41Q8WV44 630 aa25.59■■□□□ 1.69
PCDH1-203ENST00000394536 TRIM26Q12899 539 aaPredicted RBP25.42■■□□□ 1.66
PCDH1-203ENST00000394536 MYO15BQ96JP2 1530 aa25.4■■□□□ 1.66
PCDH1-203ENST00000394536 TTBK1Q5TCY1 1321 aaPredicted RBP25.4■■□□□ 1.66
PCDH1-203ENST00000394536 ZCCHC6Q5VYS8 1495 aaKnown RBP25.39■■□□□ 1.66
PCDH1-203ENST00000394536 ZEB1P37275 1124 aaPredicted RBP25.14■■□□□ 1.62
PCDH1-203ENST00000394536 CCER1Q8TC90 406 aaPredicted RBP25.03■■□□□ 1.6
PCDH1-203ENST00000394536 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.78■■□□□ 1.56
PCDH1-203ENST00000394536 CCDC180Q9P1Z9 1646 aa24.77■■□□□ 1.56
PCDH1-203ENST00000394536 DCAF1Q9Y4B6 1507 aa24.75■■□□□ 1.55
PCDH1-203ENST00000394536 RANGAP1P46060 587 aaPredicted RBP24.74■■□□□ 1.55
PCDH1-203ENST00000394536 UBTFP17480 764 aaKnown RBP24.71■■□□□ 1.55
PCDH1-203ENST00000394536 APLP2Q06481 763 aa24.53■■□□□ 1.52
PCDH1-203ENST00000394536 YTHDC1Q96MU7 727 aaKnown RBP24.51■■□□□ 1.51
PCDH1-203ENST00000394536 CENPBP07199 599 aaPredicted RBP24.5■■□□□ 1.51
PCDH1-203ENST00000394536 ABCC9O60706 1549 aa24.49■■□□□ 1.51
PCDH1-203ENST00000394536 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
PCDH1-203ENST00000394536 PELP1Q8IZL8 1130 aaKnown RBP24.4■■□□□ 1.5
PCDH1-203ENST00000394536 RSF1Q96T23 1441 aaPredicted RBP24.37■■□□□ 1.49
PCDH1-203ENST00000394536 DIEXFQ68CQ4 756 aaKnown RBP24.33■■□□□ 1.49
PCDH1-203ENST00000394536 HNRNPUL2Q1KMD3 747 aaKnown RBP24.33■■□□□ 1.49
PCDH1-203ENST00000394536 SCAF1Q9H7N4 1312 aaKnown RBP24.19■■□□□ 1.46
PCDH1-203ENST00000394536 GTF3C3Q9Y5Q9 886 aa24.12■■□□□ 1.45
PCDH1-203ENST00000394536 PABPN1Q86U42 306 aaKnown RBP eCLIP24.11■■□□□ 1.45
PCDH1-203ENST00000394536 ACIN1Q9UKV3 1341 aaKnown RBP24.04■■□□□ 1.44
PCDH1-203ENST00000394536 NEUROD1Q13562 356 aa24■■□□□ 1.43
PCDH1-203ENST00000394536 CECR2Q9BXF3 1484 aa23.97■■□□□ 1.43
PCDH1-203ENST00000394536 CSRNP3Q8WYN3 585 aa23.96■■□□□ 1.43
PCDH1-203ENST00000394536 RB1CC1Q8TDY2 1594 aa23.93■■□□□ 1.42
PCDH1-203ENST00000394536 ITGAEP38570 1179 aa23.92■■□□□ 1.42
PCDH1-203ENST00000394536 ZNF316A6NFI3 1004 aaPredicted RBP23.86■■□□□ 1.41
PCDH1-203ENST00000394536 ATP1B4Q9UN42 357 aaPredicted RBP23.85■■□□□ 1.41
PCDH1-203ENST00000394536 MROH2BQ7Z745 1585 aa23.7■■□□□ 1.38
PCDH1-203ENST00000394536 CEP162Q5TB80 1403 aa23.62■■□□□ 1.37
PCDH1-203ENST00000394536 MIER1Q8N108 512 aa23.57■■□□□ 1.36
PCDH1-203ENST00000394536 SOGA1O94964 1423 aa23.53■■□□□ 1.36
PCDH1-203ENST00000394536 CCDC88BA6NC98 1476 aa23.45■■□□□ 1.35
PCDH1-203ENST00000394536 WIZO95785 1651 aa23.45■■□□□ 1.34
PCDH1-203ENST00000394536 ABCC8Q09428 1581 aa23.45■■□□□ 1.34
PCDH1-203ENST00000394536 NACADO15069 1562 aa23.44■■□□□ 1.34
PCDH1-203ENST00000394536 TNIKQ9UKE5 1360 aa23.4■■□□□ 1.34
PCDH1-203ENST00000394536 CLIP1P30622 1438 aa23.32■■□□□ 1.32
PCDH1-203ENST00000394536 MYT1Q01538 1121 aa23.31■■□□□ 1.32
PCDH1-203ENST00000394536 FAM50AQ14320 339 aaKnown RBP23.31■■□□□ 1.32
PCDH1-203ENST00000394536 BAZ1AQ9NRL2 1556 aaPredicted RBP23.3■■□□□ 1.32
PCDH1-203ENST00000394536 BCANQ96GW7 911 aa23.29■■□□□ 1.32
PCDH1-203ENST00000394536 WRNQ14191 1432 aaPredicted RBP eCLIP23.25■■□□□ 1.31
PCDH1-203ENST00000394536 NEFLP07196 543 aa23.25■■□□□ 1.31
PCDH1-203ENST00000394536 GOLGA3Q08378 1498 aa23.25■■□□□ 1.31
PCDH1-203ENST00000394536 P3H3Q8IVL6 736 aa23.23■■□□□ 1.31
PCDH1-203ENST00000394536 RUSC2Q8N2Y8 1516 aa23.22■■□□□ 1.31
PCDH1-203ENST00000394536 EEA1Q15075 1411 aa23.19■■□□□ 1.3
PCDH1-203ENST00000394536 DDX10Q13206 875 aaKnown RBP23.04■■□□□ 1.28
PCDH1-203ENST00000394536 CEP164Q9UPV0 1460 aa23.04■■□□□ 1.28
PCDH1-203ENST00000394536 CNGB1Q14028 1251 aaPredicted RBP23.03■■□□□ 1.28
PCDH1-203ENST00000394536 HIRIP3Q9BW71 556 aaPredicted RBP23.03■■□□□ 1.28
PCDH1-203ENST00000394536 KANK4Q5T7N3 995 aaPredicted RBP22.97■■□□□ 1.27
PCDH1-203ENST00000394536 TOP2AP11388 1531 aaKnown RBP22.96■■□□□ 1.27
PCDH1-203ENST00000394536 ERICH6Q7L0X2 663 aa22.91■■□□□ 1.26
PCDH1-203ENST00000394536 VPS8Q8N3P4 1428 aa22.9■■□□□ 1.26
PCDH1-203ENST00000394536 FKBP8Q14318 412 aa22.89■■□□□ 1.25
PCDH1-203ENST00000394536 ANP32CO43423 234 aa22.87■■□□□ 1.25
PCDH1-203ENST00000394536 TRIM52Q96A61 297 aa22.86■■□□□ 1.25
PCDH1-203ENST00000394536 POLR3GLQ9BT43 218 aa22.85■■□□□ 1.25
PCDH1-203ENST00000394536 BAZ1BQ9UIG0 1483 aaKnown RBP22.85■■□□□ 1.25
PCDH1-203ENST00000394536 RAPGEF2Q9Y4G8 1499 aa22.81■■□□□ 1.24
PCDH1-203ENST00000394536 SMARCA4P51532 1647 aa22.81■■□□□ 1.24
PCDH1-203ENST00000394536 SIN3AQ96ST3 1273 aa22.8■■□□□ 1.24
PCDH1-203ENST00000394536 SMARCA2P51531 1590 aa22.8■■□□□ 1.24
PCDH1-203ENST00000394536 SUPT16HQ9Y5B9 1047 aaKnown RBP22.78■■□□□ 1.24
PCDH1-203ENST00000394536 ARID3CA6NKF2 412 aa22.77■■□□□ 1.24
PCDH1-203ENST00000394536 KCNH8Q96L42 1107 aa22.68■■□□□ 1.22
PCDH1-203ENST00000394536 CLSPNQ9HAW4 1339 aa22.67■■□□□ 1.22
PCDH1-203ENST00000394536 CCNB3Q8WWL7 1395 aa22.66■■□□□ 1.22
PCDH1-203ENST00000394536 KIF27Q86VH2 1401 aa22.64■■□□□ 1.22
PCDH1-203ENST00000394536 DHX57Q6P158 1386 aaKnown RBP22.62■■□□□ 1.21
PCDH1-203ENST00000394536 TONSLQ96HA7 1378 aa22.6■■□□□ 1.21
PCDH1-203ENST00000394536 CHIC2Q9UKJ5 165 aa22.6■■□□□ 1.21
PCDH1-203ENST00000394536 IRX6P78412 446 aaPredicted RBP22.58■■□□□ 1.21
PCDH1-203ENST00000394536 HNRNPUQ00839 825 aaKnown RBP eCLIP22.58■■□□□ 1.21
PCDH1-203ENST00000394536 ATAD2BQ9ULI0 1458 aa22.54■■□□□ 1.2
PCDH1-203ENST00000394536 ZNF326Q5BKZ1 582 aaKnown RBP22.52■■□□□ 1.2
PCDH1-203ENST00000394536 RAB3GAP2Q9H2M9 1393 aa22.5■■□□□ 1.19
PCDH1-203ENST00000394536 CDK11AQ9UQ88 783 aaPredicted RBP22.46■■□□□ 1.19
PCDH1-203ENST00000394536 SYNJ1O43426 1573 aa22.45■■□□□ 1.18
PCDH1-203ENST00000394536 RRP7BPQ9NSQ0 103 aa22.45■■□□□ 1.18
PCDH1-203ENST00000394536 FAM9BQ8IZU0 186 aa22.44■■□□□ 1.18
PCDH1-203ENST00000394536 CUX2O14529 1486 aa22.42■■□□□ 1.18
PCDH1-203ENST00000394536 KIF21BO75037 1637 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms