Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SHMT2P34897 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 RBPMS2P1-201ENST00000437762 623 ntBASIC15.9■□□□□ 0.14
SHMT2P34897 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 AC098859.1-201ENST00000502915 1238 ntBASIC15.9■□□□□ 0.14
SHMT2P34897 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.9■□□□□ 0.14
SHMT2P34897 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.9■□□□□ 0.14
SHMT2P34897 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.9■□□□□ 0.14
SHMT2P34897 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 SPTSSB-204ENST00000617024 1292 ntBASIC15.9■□□□□ 0.14
SHMT2P34897 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.9■□□□□ 0.14
SHMT2P34897 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SHMT2P34897 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 ALOX12P2-203ENST00000570921 1945 ntBASIC15.9■□□□□ 0.14
SHMT2P34897 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SHMT2P34897 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.9■□□□□ 0.14
SHMT2P34897 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SHMT2P34897 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.89■□□□□ 0.13
SHMT2P34897 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.89■□□□□ 0.13
SHMT2P34897 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.89■□□□□ 0.13
SHMT2P34897 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.89■□□□□ 0.13
SHMT2P34897 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 DBET-201ENST00000630918 3363 ntBASIC15.89■□□□□ 0.13
SHMT2P34897 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
SHMT2P34897 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.89■□□□□ 0.13
SHMT2P34897 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 HLA-H-201ENST00000383620 1096 ntBASIC15.89■□□□□ 0.13
SHMT2P34897 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.89■□□□□ 0.13
SHMT2P34897 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 AC025678.2-201ENST00000562061 970 ntBASIC15.89■□□□□ 0.13
SHMT2P34897 AC004449.1-201ENST00000564240 433 ntBASIC15.89■□□□□ 0.13
SHMT2P34897 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.89■□□□□ 0.13
SHMT2P34897 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.89■□□□□ 0.13
SHMT2P34897 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.89■□□□□ 0.13
SHMT2P34897 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.89■□□□□ 0.13
SHMT2P34897 LINC00628-201ENST00000628516 1289 ntBASIC15.89■□□□□ 0.13
SHMT2P34897 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.89■□□□□ 0.13
SHMT2P34897 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SHMT2P34897 AC092384.3-202ENST00000564646 2873 ntBASIC15.89■□□□□ 0.13
SHMT2P34897 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SHMT2P34897 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.89■□□□□ 0.13
SHMT2P34897 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 AC144831.1-201ENST00000573312 2656 ntBASIC15.89■□□□□ 0.13
SHMT2P34897 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.89■□□□□ 0.13
SHMT2P34897 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SHMT2P34897 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
SHMT2P34897 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 AC104640.1-201ENST00000562617 2109 ntBASIC15.88■□□□□ 0.13
SHMT2P34897 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.88■□□□□ 0.13
SHMT2P34897 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.88■□□□□ 0.13
SHMT2P34897 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.88■□□□□ 0.13
SHMT2P34897 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SHMT2P34897 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms