Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
XRCC1P18887 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.21■□□□□ 0.19
XRCC1P18887 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 AC084121.4-201ENST00000641598 221 ntBASIC16.21■□□□□ 0.19
XRCC1P18887 AF228730.8-201ENST00000642140 221 ntBASIC16.21■□□□□ 0.19
XRCC1P18887 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.21■□□□□ 0.19
XRCC1P18887 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
XRCC1P18887 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
XRCC1P18887 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.21■□□□□ 0.18
XRCC1P18887 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.2■□□□□ 0.18
XRCC1P18887 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.2■□□□□ 0.18
XRCC1P18887 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
XRCC1P18887 KRT8P39-201ENST00000396270 1433 ntBASIC16.2■□□□□ 0.18
XRCC1P18887 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.2■□□□□ 0.18
XRCC1P18887 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.2■□□□□ 0.18
XRCC1P18887 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 AL645939.2-201ENST00000427340 991 ntBASIC16.2■□□□□ 0.18
XRCC1P18887 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 IGHV3-62-201ENST00000520057 340 ntBASIC16.2■□□□□ 0.18
XRCC1P18887 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.2■□□□□ 0.18
XRCC1P18887 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
XRCC1P18887 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.2■□□□□ 0.18
XRCC1P18887 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.2■□□□□ 0.18
XRCC1P18887 AC027796.2-201ENST00000575326 344 ntBASIC16.2■□□□□ 0.18
XRCC1P18887 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 AC008267.7-201ENST00000624570 1194 ntBASIC16.2■□□□□ 0.18
XRCC1P18887 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
XRCC1P18887 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 AL136379.1-201ENST00000623471 2642 ntBASIC16.2■□□□□ 0.18
XRCC1P18887 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.2■□□□□ 0.18
XRCC1P18887 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
XRCC1P18887 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
XRCC1P18887 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.19■□□□□ 0.18
XRCC1P18887 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
XRCC1P18887 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 AC010491.1-201ENST00000563101 2797 ntBASIC16.19■□□□□ 0.18
XRCC1P18887 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 AC016027.1-202ENST00000607927 1699 ntBASIC16.19■□□□□ 0.18
XRCC1P18887 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.19■□□□□ 0.18
XRCC1P18887 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.19■□□□□ 0.18
XRCC1P18887 AC069335.1-201ENST00000489972 472 ntBASIC16.19■□□□□ 0.18
XRCC1P18887 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.19■□□□□ 0.18
XRCC1P18887 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.19■□□□□ 0.18
XRCC1P18887 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.19■□□□□ 0.18
XRCC1P18887 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.19■□□□□ 0.18
XRCC1P18887 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
XRCC1P18887 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.19■□□□□ 0.18
XRCC1P18887 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.19■□□□□ 0.18
XRCC1P18887 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
XRCC1P18887 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
XRCC1P18887 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
XRCC1P18887 SNX33P1-201ENST00000592116 1762 ntBASIC16.18■□□□□ 0.18
XRCC1P18887 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
XRCC1P18887 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms