Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
MSH6P52701 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
MSH6P52701 GLI3-203ENST00000437480 451 ntTSL 2 BASIC33.33■■■□□ 2.93
MSH6P52701 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC33.32■■■□□ 2.92
MSH6P52701 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC33.32■■■□□ 2.92
MSH6P52701 AL162430.1-201ENST00000480705 870 ntBASIC33.32■■■□□ 2.92
MSH6P52701 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC33.32■■■□□ 2.92
MSH6P52701 AF131216.4-201ENST00000638924 1588 ntBASIC33.31■■■□□ 2.92
MSH6P52701 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC33.31■■■□□ 2.92
MSH6P52701 AL449106.1-201ENST00000608517 1980 ntBASIC33.31■■■□□ 2.92
MSH6P52701 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC33.31■■■□□ 2.92
MSH6P52701 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
MSH6P52701 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC33.31■■■□□ 2.92
MSH6P52701 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
MSH6P52701 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC33.3■■■□□ 2.92
MSH6P52701 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC33.3■■■□□ 2.92
MSH6P52701 AF213884.3-201ENST00000563833 479 ntBASIC33.3■■■□□ 2.92
MSH6P52701 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
MSH6P52701 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
MSH6P52701 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC33.29■■■□□ 2.92
MSH6P52701 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC33.29■■■□□ 2.92
MSH6P52701 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
MSH6P52701 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC33.29■■■□□ 2.92
MSH6P52701 AL136967.2-201ENST00000623968 743 ntBASIC33.29■■■□□ 2.92
MSH6P52701 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
MSH6P52701 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
MSH6P52701 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
MSH6P52701 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
MSH6P52701 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC33.28■■■□□ 2.92
MSH6P52701 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
MSH6P52701 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC33.28■■■□□ 2.92
MSH6P52701 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
MSH6P52701 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC33.27■■■□□ 2.92
MSH6P52701 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC33.27■■■□□ 2.92
MSH6P52701 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC33.27■■■□□ 2.92
MSH6P52701 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC33.27■■■□□ 2.92
MSH6P52701 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC33.26■■■□□ 2.92
MSH6P52701 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC33.26■■■□□ 2.92
MSH6P52701 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC33.26■■■□□ 2.92
MSH6P52701 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC33.26■■■□□ 2.92
MSH6P52701 AC087623.3-201ENST00000607047 1098 ntBASIC33.26■■■□□ 2.92
MSH6P52701 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC33.26■■■□□ 2.91
MSH6P52701 MIR939-201ENST00000401314 82 ntBASIC33.25■■■□□ 2.91
MSH6P52701 SRD5A1P1-201ENST00000442297 786 ntBASIC33.25■■■□□ 2.91
MSH6P52701 CLTA-206ENST00000466396 695 ntTSL 2 BASIC33.25■■■□□ 2.91
MSH6P52701 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
MSH6P52701 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
MSH6P52701 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC33.25■■■□□ 2.91
MSH6P52701 PROC-203ENST00000409048 1586 ntTSL 5 BASIC33.25■■■□□ 2.91
MSH6P52701 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC33.24■■■□□ 2.91
MSH6P52701 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC33.24■■■□□ 2.91
MSH6P52701 GRAMD4P4-201ENST00000613563 1115 ntBASIC33.24■■■□□ 2.91
MSH6P52701 RBM38-205ENST00000440234 686 ntTSL 2 BASIC33.23■■■□□ 2.91
MSH6P52701 PLD4-205ENST00000553861 667 ntTSL 2 BASIC33.23■■■□□ 2.91
MSH6P52701 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC33.22■■■□□ 2.91
MSH6P52701 AP001330.3-201ENST00000520123 633 ntBASIC33.22■■■□□ 2.91
MSH6P52701 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC33.22■■■□□ 2.91
MSH6P52701 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC33.21■■■□□ 2.91
MSH6P52701 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC33.21■■■□□ 2.91
MSH6P52701 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC33.21■■■□□ 2.91
MSH6P52701 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
MSH6P52701 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC33.2■■■□□ 2.91
MSH6P52701 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
MSH6P52701 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC33.2■■■□□ 2.9
MSH6P52701 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC33.2■■■□□ 2.9
MSH6P52701 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
MSH6P52701 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC33.19■■■□□ 2.9
MSH6P52701 SNX5-217ENST00000606557 1087 ntBASIC33.19■■■□□ 2.9
MSH6P52701 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC33.19■■■□□ 2.9
MSH6P52701 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC33.19■■■□□ 2.9
MSH6P52701 BX255925.1-201ENST00000566954 1854 ntBASIC33.19■■■□□ 2.9
MSH6P52701 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC33.18■■■□□ 2.9
MSH6P52701 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
MSH6P52701 STOX2-205ENST00000513034 807 ntTSL 3 BASIC33.17■■■□□ 2.9
MSH6P52701 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
MSH6P52701 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC33.17■■■□□ 2.9
MSH6P52701 MIR6722-201ENST00000617286 78 ntBASIC33.17■■■□□ 2.9
MSH6P52701 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC33.16■■■□□ 2.9
MSH6P52701 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
MSH6P52701 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
MSH6P52701 AC091305.1-201ENST00000479476 895 ntBASIC33.16■■■□□ 2.9
MSH6P52701 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC33.16■■■□□ 2.9
MSH6P52701 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
MSH6P52701 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC33.15■■■□□ 2.9
MSH6P52701 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
MSH6P52701 SSSCA1-AS1-201ENST00000567594 614 ntBASIC33.14■■■□□ 2.9
MSH6P52701 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
MSH6P52701 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
MSH6P52701 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC33.13■■■□□ 2.89
MSH6P52701 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
MSH6P52701 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC33.12■■■□□ 2.89
MSH6P52701 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC33.12■■■□□ 2.89
MSH6P52701 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
MSH6P52701 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC33.12■■■□□ 2.89
MSH6P52701 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
MSH6P52701 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
MSH6P52701 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC33.11■■■□□ 2.89
MSH6P52701 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
MSH6P52701 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
MSH6P52701 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms