Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
KRT39Q6A163 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 AC010491.1-201ENST00000563101 2797 ntBASIC17.54■□□□□ 0.4
KRT39Q6A163 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
KRT39Q6A163 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
KRT39Q6A163 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.54■□□□□ 0.4
KRT39Q6A163 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.54■□□□□ 0.4
KRT39Q6A163 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.54■□□□□ 0.4
KRT39Q6A163 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
KRT39Q6A163 HLA-H-201ENST00000383620 1096 ntBASIC17.54■□□□□ 0.4
KRT39Q6A163 KRT18P13-201ENST00000400056 1290 ntBASIC17.54■□□□□ 0.4
KRT39Q6A163 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.54■□□□□ 0.4
KRT39Q6A163 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.54■□□□□ 0.4
KRT39Q6A163 RNA5SP410-201ENST00000516285 106 ntBASIC17.54■□□□□ 0.4
KRT39Q6A163 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC17.54■□□□□ 0.4
KRT39Q6A163 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.54■□□□□ 0.4
KRT39Q6A163 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.54■□□□□ 0.4
KRT39Q6A163 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 AC004835.2-201ENST00000603762 682 ntBASIC17.54■□□□□ 0.4
KRT39Q6A163 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.54■□□□□ 0.4
KRT39Q6A163 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.54■□□□□ 0.4
KRT39Q6A163 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.54■□□□□ 0.4
KRT39Q6A163 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.54■□□□□ 0.4
KRT39Q6A163 AC022188.1-201ENST00000620960 1664 ntBASIC17.54■□□□□ 0.4
KRT39Q6A163 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
KRT39Q6A163 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.53■□□□□ 0.4
KRT39Q6A163 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.53■□□□□ 0.4
KRT39Q6A163 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.53■□□□□ 0.4
KRT39Q6A163 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 AL627223.1-201ENST00000416693 442 ntBASIC17.53■□□□□ 0.4
KRT39Q6A163 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.53■□□□□ 0.4
KRT39Q6A163 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 AC093520.2-201ENST00000561830 333 ntBASIC17.53■□□□□ 0.4
KRT39Q6A163 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
KRT39Q6A163 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
KRT39Q6A163 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
KRT39Q6A163 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.52■□□□□ 0.4
KRT39Q6A163 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.52■□□□□ 0.4
KRT39Q6A163 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 AC112504.1-201ENST00000623415 1841 ntBASIC17.52■□□□□ 0.4
KRT39Q6A163 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.52■□□□□ 0.4
KRT39Q6A163 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
KRT39Q6A163 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC17.52■□□□□ 0.4
KRT39Q6A163 AC254562.1-201ENST00000417586 456 ntBASIC17.52■□□□□ 0.4
KRT39Q6A163 KRT18P32-201ENST00000424695 1287 ntBASIC17.52■□□□□ 0.4
KRT39Q6A163 AP006288.1-201ENST00000446065 395 ntBASIC17.52■□□□□ 0.4
KRT39Q6A163 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.52■□□□□ 0.4
KRT39Q6A163 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.52■□□□□ 0.4
KRT39Q6A163 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.52■□□□□ 0.4
KRT39Q6A163 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
KRT39Q6A163 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.52■□□□□ 0.4
KRT39Q6A163 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.52■□□□□ 0.4
KRT39Q6A163 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.52■□□□□ 0.4
KRT39Q6A163 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
KRT39Q6A163 AP3S2-216ENST00000617003 1561 ntBASIC17.52■□□□□ 0.39
KRT39Q6A163 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms