Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PKNOX1P55347 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PKNOX1P55347 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
PKNOX1P55347 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.1■□□□□ 0.17
PKNOX1P55347 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.1■□□□□ 0.17
PKNOX1P55347 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PKNOX1P55347 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.09■□□□□ 0.17
PKNOX1P55347 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.09■□□□□ 0.17
PKNOX1P55347 AC105339.3-201ENST00000560043 636 ntBASIC16.09■□□□□ 0.17
PKNOX1P55347 CLEC4GP1-201ENST00000596555 870 ntBASIC16.09■□□□□ 0.17
PKNOX1P55347 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 AL356488.2-201ENST00000602755 427 ntBASIC16.09■□□□□ 0.17
PKNOX1P55347 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 PRAL-201ENST00000624952 3286 ntBASIC16.09■□□□□ 0.17
PKNOX1P55347 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.09■□□□□ 0.17
PKNOX1P55347 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.09■□□□□ 0.17
PKNOX1P55347 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PKNOX1P55347 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PKNOX1P55347 LINC02228-204ENST00000642115 2962 ntBASIC16.08■□□□□ 0.17
PKNOX1P55347 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PKNOX1P55347 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PKNOX1P55347 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.08■□□□□ 0.17
PKNOX1P55347 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PKNOX1P55347 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.17
PKNOX1P55347 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
PKNOX1P55347 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PKNOX1P55347 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.08■□□□□ 0.17
PKNOX1P55347 REXO1L8P-201ENST00000604378 1897 ntBASIC16.08■□□□□ 0.17
PKNOX1P55347 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PKNOX1P55347 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 MRPL20P1-201ENST00000400819 433 ntBASIC16.08■□□□□ 0.16
PKNOX1P55347 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.08■□□□□ 0.16
PKNOX1P55347 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.08■□□□□ 0.16
PKNOX1P55347 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.08■□□□□ 0.16
PKNOX1P55347 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
PKNOX1P55347 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 AC012569.1-201ENST00000591191 1524 ntBASIC16.08■□□□□ 0.16
PKNOX1P55347 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
PKNOX1P55347 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PKNOX1P55347 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PKNOX1P55347 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PKNOX1P55347 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PKNOX1P55347 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PKNOX1P55347 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms