RNA–Protein interactions for RNA: ENST00000642115.1

LINC02228-204, Transcript of long intergenic non-protein coding RNA 2228, humanhuman

BASIC

Gene LINC02228, Length 2,962 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02228-204ENST00000642115 NISCHQ9Y2I1 1504 aa30.06■■■□□ 2.4
LINC02228-204ENST00000642115 SHROOM4Q9ULL8 1493 aa26.9■■□□□ 1.9
LINC02228-204ENST00000642115 SUPT5HO00267 1087 aaKnown RBP26.68■■□□□ 1.86
LINC02228-204ENST00000642115 HRCP23327 699 aa26.61■■□□□ 1.85
LINC02228-204ENST00000642115 PPARGC1BQ86YN6 1023 aaKnown RBP26.14■■□□□ 1.77
LINC02228-204ENST00000642115 PELP1Q8IZL8 1130 aaKnown RBP26.01■■□□□ 1.75
LINC02228-204ENST00000642115 PCGF6Q9BYE7 350 aa25.96■■□□□ 1.75
LINC02228-204ENST00000642115 DCAF8L2P0C7V8 631 aa25.88■■□□□ 1.73
LINC02228-204ENST00000642115 CHIC1Q5VXU3 224 aa25.8■■□□□ 1.72
LINC02228-204ENST00000642115 MYO15BQ96JP2 1530 aa25.76■■□□□ 1.71
LINC02228-204ENST00000642115 ZCCHC6Q5VYS8 1495 aaKnown RBP25.44■■□□□ 1.66
LINC02228-204ENST00000642115 LOC105371045A0A1W2PR82 267 aa25.39■■□□□ 1.66
LINC02228-204ENST00000642115 SCAF1Q9H7N4 1312 aaKnown RBP25.38■■□□□ 1.65
LINC02228-204ENST00000642115 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
LINC02228-204ENST00000642115 MYT1Q01538 1121 aa25.04■■□□□ 1.6
LINC02228-204ENST00000642115 TRIM26Q12899 539 aaPredicted RBP24.97■■□□□ 1.59
LINC02228-204ENST00000642115 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
LINC02228-204ENST00000642115 EHMT2Q96KQ7 1210 aa24.86■■□□□ 1.57
LINC02228-204ENST00000642115 ZEB1P37275 1124 aaPredicted RBP24.81■■□□□ 1.56
LINC02228-204ENST00000642115 FAM9AQ8IZU1 332 aaPredicted RBP24.77■■□□□ 1.56
LINC02228-204ENST00000642115 ACIN1Q9UKV3 1341 aaKnown RBP24.63■■□□□ 1.53
LINC02228-204ENST00000642115 NEUROD1Q13562 356 aa24.59■■□□□ 1.53
LINC02228-204ENST00000642115 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
LINC02228-204ENST00000642115 GTF3C3Q9Y5Q9 886 aa24.47■■□□□ 1.51
LINC02228-204ENST00000642115 CENPBP07199 599 aaPredicted RBP24.21■■□□□ 1.47
LINC02228-204ENST00000642115 RSF1Q96T23 1441 aaPredicted RBP24.17■■□□□ 1.46
LINC02228-204ENST00000642115 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.15■■□□□ 1.46
LINC02228-204ENST00000642115 TTBK1Q5TCY1 1321 aaPredicted RBP24.13■■□□□ 1.45
LINC02228-204ENST00000642115 CCER1Q8TC90 406 aaPredicted RBP24.07■■□□□ 1.44
LINC02228-204ENST00000642115 ABCC9O60706 1549 aa24.06■■□□□ 1.44
LINC02228-204ENST00000642115 DIEXFQ68CQ4 756 aaKnown RBP24.05■■□□□ 1.44
LINC02228-204ENST00000642115 SCRIBQ14160 1630 aa24.05■■□□□ 1.44
LINC02228-204ENST00000642115 RB1CC1Q8TDY2 1594 aa23.98■■□□□ 1.43
LINC02228-204ENST00000642115 YTHDC1Q96MU7 727 aaKnown RBP23.74■■□□□ 1.39
LINC02228-204ENST00000642115 CECR2Q9BXF3 1484 aa23.71■■□□□ 1.39
LINC02228-204ENST00000642115 MROH2BQ7Z745 1585 aa23.56■■□□□ 1.36
LINC02228-204ENST00000642115 BCL11AQ9H165 835 aa23.55■■□□□ 1.36
LINC02228-204ENST00000642115 ZNF316A6NFI3 1004 aaPredicted RBP23.49■■□□□ 1.35
LINC02228-204ENST00000642115 UBTFP17480 764 aaKnown RBP23.46■■□□□ 1.35
LINC02228-204ENST00000642115 MIER1Q8N108 512 aa23.44■■□□□ 1.34
LINC02228-204ENST00000642115 WIZO95785 1651 aa23.44■■□□□ 1.34
LINC02228-204ENST00000642115 ANP32EQ9BTT0 268 aa23.37■■□□□ 1.33
LINC02228-204ENST00000642115 HNRNPUL2Q1KMD3 747 aaKnown RBP23.36■■□□□ 1.33
LINC02228-204ENST00000642115 CEP162Q5TB80 1403 aa23.3■■□□□ 1.32
LINC02228-204ENST00000642115 NACADO15069 1562 aa23.29■■□□□ 1.32
LINC02228-204ENST00000642115 ABCC8Q09428 1581 aa23.29■■□□□ 1.32
LINC02228-204ENST00000642115 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
LINC02228-204ENST00000642115 RANGAP1P46060 587 aaPredicted RBP23.25■■□□□ 1.31
LINC02228-204ENST00000642115 SOGA1O94964 1423 aa23.25■■□□□ 1.31
LINC02228-204ENST00000642115 TSHZ2Q9NRE2 1034 aa23.2■■□□□ 1.3
LINC02228-204ENST00000642115 CSRNP3Q8WYN3 585 aa23.2■■□□□ 1.3
LINC02228-204ENST00000642115 SUPT16HQ9Y5B9 1047 aaKnown RBP23.2■■□□□ 1.3
LINC02228-204ENST00000642115 WRNQ14191 1432 aaPredicted RBP eCLIP23.12■■□□□ 1.29
LINC02228-204ENST00000642115 RUSC2Q8N2Y8 1516 aa23.11■■□□□ 1.29
LINC02228-204ENST00000642115 TNIKQ9UKE5 1360 aa23.09■■□□□ 1.29
LINC02228-204ENST00000642115 BAZ1AQ9NRL2 1556 aaPredicted RBP23.07■■□□□ 1.28
LINC02228-204ENST00000642115 PABPN1Q86U42 306 aaKnown RBP eCLIP23.04■■□□□ 1.28
LINC02228-204ENST00000642115 APLP2Q06481 763 aa23■■□□□ 1.27
LINC02228-204ENST00000642115 CLSPNQ9HAW4 1339 aa22.99■■□□□ 1.27
LINC02228-204ENST00000642115 EIF4G1Q04637 1599 aaKnown RBP22.97■■□□□ 1.27
LINC02228-204ENST00000642115 TOP2AP11388 1531 aaKnown RBP22.86■■□□□ 1.25
LINC02228-204ENST00000642115 GOLGA3Q08378 1498 aa22.86■■□□□ 1.25
LINC02228-204ENST00000642115 SMARCA2P51531 1590 aa22.83■■□□□ 1.24
LINC02228-204ENST00000642115 EEA1Q15075 1411 aa22.79■■□□□ 1.24
LINC02228-204ENST00000642115 CLIP1P30622 1438 aa22.79■■□□□ 1.24
LINC02228-204ENST00000642115 PRKCSHP14314 528 aaPredicted RBP22.77■■□□□ 1.24
LINC02228-204ENST00000642115 UNC13AQ9UPW8 1703 aa22.75■■□□□ 1.23
LINC02228-204ENST00000642115 SMARCA4P51532 1647 aa22.72■■□□□ 1.23
LINC02228-204ENST00000642115 BCANQ96GW7 911 aa22.71■■□□□ 1.23
LINC02228-204ENST00000642115 ITGAEP38570 1179 aa22.67■■□□□ 1.22
LINC02228-204ENST00000642115 CEP164Q9UPV0 1460 aa22.64■■□□□ 1.21
LINC02228-204ENST00000642115 RBM19Q9Y4C8 960 aaKnown RBP22.62■■□□□ 1.21
LINC02228-204ENST00000642115 VPS8Q8N3P4 1428 aa22.61■■□□□ 1.21
LINC02228-204ENST00000642115 RAPGEF2Q9Y4G8 1499 aa22.56■■□□□ 1.2
LINC02228-204ENST00000642115 FKBP8Q14318 412 aa22.53■■□□□ 1.2
LINC02228-204ENST00000642115 KANK4Q5T7N3 995 aaPredicted RBP22.53■■□□□ 1.2
LINC02228-204ENST00000642115 BICRAQ9NZM4 1560 aa22.52■■□□□ 1.2
LINC02228-204ENST00000642115 KCNH8Q96L42 1107 aa22.51■■□□□ 1.19
LINC02228-204ENST00000642115 DHX57Q6P158 1386 aaKnown RBP22.5■■□□□ 1.19
LINC02228-204ENST00000642115 SYNJ1O43426 1573 aa22.49■■□□□ 1.19
LINC02228-204ENST00000642115 MSH5O43196 834 aa22.49■■□□□ 1.19
LINC02228-204ENST00000642115 KIF21BO75037 1637 aa22.41■■□□□ 1.18
LINC02228-204ENST00000642115 DDX10Q13206 875 aaKnown RBP22.3■■□□□ 1.16
LINC02228-204ENST00000642115 BAZ1BQ9UIG0 1483 aaKnown RBP22.29■■□□□ 1.16
LINC02228-204ENST00000642115 HIRIP3Q9BW71 556 aaPredicted RBP22.29■■□□□ 1.16
LINC02228-204ENST00000642115 NEFLP07196 543 aa22.25■■□□□ 1.15
LINC02228-204ENST00000642115 ATP1B4Q9UN42 357 aaPredicted RBP22.21■■□□□ 1.15
LINC02228-204ENST00000642115 ERICH6Q7L0X2 663 aa22.2■■□□□ 1.14
LINC02228-204ENST00000642115 SIN3AQ96ST3 1273 aa22.2■■□□□ 1.14
LINC02228-204ENST00000642115 ARAP1Q96P48 1450 aa22.18■■□□□ 1.14
LINC02228-204ENST00000642115 CCNB3Q8WWL7 1395 aa22.18■■□□□ 1.14
LINC02228-204ENST00000642115 TRIM52Q96A61 297 aa22.17■■□□□ 1.14
LINC02228-204ENST00000642115 FAM50AQ14320 339 aaKnown RBP22.17■■□□□ 1.14
LINC02228-204ENST00000642115 FANCIQ9NVI1 1328 aa22.16■■□□□ 1.14
LINC02228-204ENST00000642115 ATAD2BQ9ULI0 1458 aa22.16■■□□□ 1.14
LINC02228-204ENST00000642115 DEKP35659 375 aaKnown RBP22.13■■□□□ 1.13
LINC02228-204ENST00000642115 RAB3GAP2Q9H2M9 1393 aa22.12■■□□□ 1.13
LINC02228-204ENST00000642115 ANO8Q9HCE9 1232 aaPredicted RBP22.12■■□□□ 1.13
LINC02228-204ENST00000642115 P3H3Q8IVL6 736 aa22.08■■□□□ 1.12
LINC02228-204ENST00000642115 RRBP1Q9P2E9 1410 aaKnown RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms