RNA–Protein interactions for RNA: ENST00000614240.4

SMN2-213, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SMN2, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-213ENST00000614240 NISCHQ9Y2I1 1504 aa44.59■■■■■ 4.73
SMN2-213ENST00000614240 ABCC9O60706 1549 aa40.18■■■■■ 4.02
SMN2-213ENST00000614240 CCDC180Q9P1Z9 1646 aa39.98■■■■□ 3.99
SMN2-213ENST00000614240 RB1CC1Q8TDY2 1594 aa38.17■■■■□ 3.7
SMN2-213ENST00000614240 DCAF8L2P0C7V8 631 aa37.91■■■■□ 3.66
SMN2-213ENST00000614240 NACADO15069 1562 aa37.87■■■■□ 3.65
SMN2-213ENST00000614240 DNAJC5BQ9UF47 199 aa37.74■■■■□ 3.63
SMN2-213ENST00000614240 PABPN1Q86U42 306 aaKnown RBP eCLIP37.47■■■■□ 3.59
SMN2-213ENST00000614240 MYO15BQ96JP2 1530 aa37.29■■■■□ 3.56
SMN2-213ENST00000614240 UNC13AQ9UPW8 1703 aa37.16■■■■□ 3.54
SMN2-213ENST00000614240 BICRAQ9NZM4 1560 aa36.98■■■■□ 3.51
SMN2-213ENST00000614240 ZCCHC6Q5VYS8 1495 aaKnown RBP36.92■■■■□ 3.5
SMN2-213ENST00000614240 DCAF1Q9Y4B6 1507 aa36.78■■■■□ 3.48
SMN2-213ENST00000614240 SHROOM4Q9ULL8 1493 aa36.51■■■■□ 3.44
SMN2-213ENST00000614240 SCRIBQ14160 1630 aa36.51■■■■□ 3.43
SMN2-213ENST00000614240 CC2D2AQ9P2K1 1620 aa36.23■■■■□ 3.39
SMN2-213ENST00000614240 CECR2Q9BXF3 1484 aa36.2■■■■□ 3.39
SMN2-213ENST00000614240 EIF4G1Q04637 1599 aaKnown RBP36.13■■■■□ 3.37
SMN2-213ENST00000614240 NCAPD3P42695 1498 aa34.98■■■■□ 3.19
SMN2-213ENST00000614240 ATAD2BQ9ULI0 1458 aa34.87■■■■□ 3.17
SMN2-213ENST00000614240 SMARCA2P51531 1590 aa34.78■■■■□ 3.16
SMN2-213ENST00000614240 SMARCA4P51532 1647 aa34.77■■■■□ 3.16
SMN2-213ENST00000614240 DNAJC5Q9H3Z4 198 aa34.75■■■■□ 3.15
SMN2-213ENST00000614240 ERCC6Q03468 1493 aa34.75■■■■□ 3.15
SMN2-213ENST00000614240 HMGXB3Q12766 1538 aa34.67■■■■□ 3.14
SMN2-213ENST00000614240 BAZ1AQ9NRL2 1556 aaPredicted RBP34.63■■■■□ 3.13
SMN2-213ENST00000614240 CUX2O14529 1486 aa34.63■■■■□ 3.13
SMN2-213ENST00000614240 BAZ1BQ9UIG0 1483 aaKnown RBP34.57■■■■□ 3.12
SMN2-213ENST00000614240 NESP48681 1621 aa34.47■■■■□ 3.11
SMN2-213ENST00000614240 PEG3Q9GZU2 1588 aa34.4■■■■□ 3.1
SMN2-213ENST00000614240 MROH2BQ7Z745 1585 aa34.36■■■■□ 3.09
SMN2-213ENST00000614240 LAMC3Q9Y6N6 1575 aa34.18■■■■□ 3.06
SMN2-213ENST00000614240 PDS5BQ9NTI5 1447 aa34.07■■■■□ 3.04
SMN2-213ENST00000614240 THOC2Q8NI27 1593 aaKnown RBP34.05■■■■□ 3.04
SMN2-213ENST00000614240 CADPSQ9ULU8 1353 aa33.96■■■■□ 3.03
SMN2-213ENST00000614240 KIF21AQ7Z4S6 1674 aa33.94■■■■□ 3.02
SMN2-213ENST00000614240 WIZO95785 1651 aa33.93■■■■□ 3.02
SMN2-213ENST00000614240 MRC2Q9UBG0 1479 aa33.75■■■□□ 2.99
SMN2-213ENST00000614240 RSF1Q96T23 1441 aaPredicted RBP33.65■■■□□ 2.98
SMN2-213ENST00000614240 WDR62O43379 1518 aa33.61■■■□□ 2.97
SMN2-213ENST00000614240 CEP164Q9UPV0 1460 aa33.61■■■□□ 2.97
SMN2-213ENST00000614240 FANCD2Q9BXW9 1451 aa33.56■■■□□ 2.96
SMN2-213ENST00000614240 CFTRP13569 1480 aa33.51■■■□□ 2.96
SMN2-213ENST00000614240 TOP2AP11388 1531 aaKnown RBP33.51■■■□□ 2.95
SMN2-213ENST00000614240 TRIM41Q8WV44 630 aa33.29■■■□□ 2.92
SMN2-213ENST00000614240 URB2Q14146 1524 aaKnown RBP33.25■■■□□ 2.91
SMN2-213ENST00000614240 CCDC88BA6NC98 1476 aa33.17■■■□□ 2.9
SMN2-213ENST00000614240 OSCARQ8IYS5 282 aa33.15■■■□□ 2.9
SMN2-213ENST00000614240 PRDM2Q13029 1718 aa33.05■■■□□ 2.88
SMN2-213ENST00000614240 IFT140Q96RY7 1462 aa32.94■■■□□ 2.86
SMN2-213ENST00000614240 TOPBP1Q92547 1522 aa32.9■■■□□ 2.86
SMN2-213ENST00000614240 ZNF608Q9ULD9 1512 aaPredicted RBP32.87■■■□□ 2.85
SMN2-213ENST00000614240 ABCC8Q09428 1581 aa32.85■■■□□ 2.85
SMN2-213ENST00000614240 DNMBPQ6XZF7 1577 aa32.75■■■□□ 2.83
SMN2-213ENST00000614240 EIF4G3O43432 1585 aaKnown RBP32.64■■■□□ 2.82
SMN2-213ENST00000614240 AQRO60306 1485 aaKnown RBP eCLIP32.61■■■□□ 2.81
SMN2-213ENST00000614240 RIMBP3CA6NJZ7 1639 aa32.59■■■□□ 2.81
SMN2-213ENST00000614240 RIMBP3BA6NNM3 1639 aa32.59■■■□□ 2.81
SMN2-213ENST00000614240 RIMBP3Q9UFD9 1639 aa32.59■■■□□ 2.81
SMN2-213ENST00000614240 TARBP1Q13395 1621 aaKnown RBP32.55■■■□□ 2.8
SMN2-213ENST00000614240 POLA1P09884 1462 aaPredicted RBP32.54■■■□□ 2.8
SMN2-213ENST00000614240 FBLN2P98095 1184 aa32.54■■■□□ 2.8
SMN2-213ENST00000614240 ARHGEF11O15085 1522 aa32.5■■■□□ 2.79
SMN2-213ENST00000614240 SOGA1O94964 1423 aa32.47■■■□□ 2.79
SMN2-213ENST00000614240 RAD54L2Q9Y4B4 1467 aa32.47■■■□□ 2.79
SMN2-213ENST00000614240 TDRD9Q8NDG6 1382 aaKnown RBP32.43■■■□□ 2.78
SMN2-213ENST00000614240 CHD1O14646 1710 aa32.4■■■□□ 2.78
SMN2-213ENST00000614240 CYB5RLQ6IPT4 315 aa32.39■■■□□ 2.78
SMN2-213ENST00000614240 FGD5Q6ZNL6 1462 aa32.35■■■□□ 2.77
SMN2-213ENST00000614240 CUX1P39880 1505 aa32.29■■■□□ 2.76
SMN2-213ENST00000614240 SUPT5HO00267 1087 aaKnown RBP32.28■■■□□ 2.76
SMN2-213ENST00000614240 SNAPC4Q5SXM2 1469 aa32.25■■■□□ 2.75
SMN2-213ENST00000614240 CHMP7Q8WUX9 453 aaPredicted RBP32.25■■■□□ 2.75
SMN2-213ENST00000614240 WDR97A6NE52 1622 aa32.22■■■□□ 2.75
SMN2-213ENST00000614240 GRIN2BQ13224 1484 aa32.16■■■□□ 2.74
SMN2-213ENST00000614240 ARAP1Q96P48 1450 aa32.16■■■□□ 2.74
SMN2-213ENST00000614240 MAGI1Q96QZ7 1491 aaPredicted RBP32.16■■■□□ 2.74
SMN2-213ENST00000614240 TRHP20396 242 aaPredicted RBP32.11■■■□□ 2.73
SMN2-213ENST00000614240 SYNJ1O43426 1573 aa32.07■■■□□ 2.72
SMN2-213ENST00000614240 SYNJ2O15056 1496 aa32.05■■■□□ 2.72
SMN2-213ENST00000614240 GAPVD1Q14C86 1478 aa32.05■■■□□ 2.72
SMN2-213ENST00000614240 CLASP1Q7Z460 1538 aa32.03■■■□□ 2.72
SMN2-213ENST00000614240 ABCA10Q8WWZ4 1543 aa31.97■■■□□ 2.71
SMN2-213ENST00000614240 PBRM1Q86U86 1689 aa31.94■■■□□ 2.7
SMN2-213ENST00000614240 WRNQ14191 1432 aaPredicted RBP eCLIP31.89■■■□□ 2.7
SMN2-213ENST00000614240 ABCA5Q8WWZ7 1642 aa31.87■■■□□ 2.69
SMN2-213ENST00000614240 GRIN2AQ12879 1464 aa31.73■■■□□ 2.67
SMN2-213ENST00000614240 TOP2BQ02880 1626 aa31.73■■■□□ 2.67
SMN2-213ENST00000614240 BIVM-ERCC5R4GMW8 1640 aa31.71■■■□□ 2.67
SMN2-213ENST00000614240 ADAMTS12P58397 1594 aa31.66■■■□□ 2.66
SMN2-213ENST00000614240 FHAD1B1AJZ9 1412 aa31.65■■■□□ 2.66
SMN2-213ENST00000614240 NUP160Q12769 1436 aa31.6■■■□□ 2.65
SMN2-213ENST00000614240 CEP170Q5SW79 1584 aa31.58■■■□□ 2.65
SMN2-213ENST00000614240 ERICH3Q5RHP9 1530 aa31.56■■■□□ 2.64
SMN2-213ENST00000614240 ERCC6L2Q5T890 1561 aa31.55■■■□□ 2.64
SMN2-213ENST00000614240 SHROOM2Q13796 1616 aa31.42■■■□□ 2.62
SMN2-213ENST00000614240 JPH4Q96JJ6 628 aa31.39■■■□□ 2.62
SMN2-213ENST00000614240 PRG4Q92954 1404 aaPredicted RBP31.39■■■□□ 2.62
SMN2-213ENST00000614240 AEBP2Q6ZN18 517 aaPredicted RBP31.25■■■□□ 2.59
SMN2-213ENST00000614240 KIF27Q86VH2 1401 aa31.22■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms