Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 PMS2P1-201ENST00000431037 1228 ntBASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 BX005266.1-201ENST00000473402 457 ntBASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 AL589182.2-201ENST00000619332 1049 ntBASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 AC007292.2-201ENST00000593524 1812 ntBASIC16.02■□□□□ 0.16
CCDC28BQ9BUN5 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 SLC22A20-204ENST00000530038 1673 ntBASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
CCDC28BQ9BUN5 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AL592424.1-201ENST00000563624 1536 ntBASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AC211429.1-201ENST00000415277 523 ntBASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AC104819.1-201ENST00000504587 486 ntBASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 LINC01023-201ENST00000606054 436 ntBASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AL353732.1-201ENST00000569618 1459 ntBASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 PPT1-215ENST00000641471 2368 ntBASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CCDC28BQ9BUN5 AC104581.4-201ENST00000623126 3052 ntBASIC16■□□□□ 0.15
CCDC28BQ9BUN5 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms