RNA–Protein interactions for RNA: ENST00000428956.6

C4A-243, Transcript of complement C4A (Rodgers blood group), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C4A, Length 5,460 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C4A-243ENST00000428956 DCAF8L2P0C7V8 631 aa26.64■■□□□ 1.86
C4A-243ENST00000428956 NISCHQ9Y2I1 1504 aa26.31■■□□□ 1.8
C4A-243ENST00000428956 SUPT5HO00267 1087 aaKnown RBP25.73■■□□□ 1.71
C4A-243ENST00000428956 SHROOM4Q9ULL8 1493 aa25.18■■□□□ 1.62
C4A-243ENST00000428956 PELP1Q8IZL8 1130 aaKnown RBP24.95■■□□□ 1.58
C4A-243ENST00000428956 APLP2Q06481 763 aa24.59■■□□□ 1.53
C4A-243ENST00000428956 EHMT2Q96KQ7 1210 aa24.5■■□□□ 1.51
C4A-243ENST00000428956 ZEB1P37275 1124 aaPredicted RBP24.36■■□□□ 1.49
C4A-243ENST00000428956 PCGF6Q9BYE7 350 aa24.31■■□□□ 1.48
C4A-243ENST00000428956 FAM9AQ8IZU1 332 aaPredicted RBP24.16■■□□□ 1.46
C4A-243ENST00000428956 CENPBP07199 599 aaPredicted RBP24.14■■□□□ 1.46
C4A-243ENST00000428956 TRIM41Q8WV44 630 aa24.01■■□□□ 1.43
C4A-243ENST00000428956 CCER1Q8TC90 406 aaPredicted RBP23.88■■□□□ 1.41
C4A-243ENST00000428956 TTBK1Q5TCY1 1321 aaPredicted RBP23.79■■□□□ 1.4
C4A-243ENST00000428956 MYT1Q01538 1121 aa23.69■■□□□ 1.38
C4A-243ENST00000428956 ERICH6Q7L0X2 663 aa23.67■■□□□ 1.38
C4A-243ENST00000428956 UBTFP17480 764 aaKnown RBP23.6■■□□□ 1.37
C4A-243ENST00000428956 TRIM26Q12899 539 aaPredicted RBP23.54■■□□□ 1.36
C4A-243ENST00000428956 RANGAP1P46060 587 aaPredicted RBP23.47■■□□□ 1.35
C4A-243ENST00000428956 NEFLP07196 543 aa23.47■■□□□ 1.35
C4A-243ENST00000428956 HRCP23327 699 aa23.41■■□□□ 1.34
C4A-243ENST00000428956 ATP1B4Q9UN42 357 aaPredicted RBP23.36■■□□□ 1.33
C4A-243ENST00000428956 YTHDC1Q96MU7 727 aaKnown RBP23.2■■□□□ 1.31
C4A-243ENST00000428956 CHIC1Q5VXU3 224 aa23.18■■□□□ 1.3
C4A-243ENST00000428956 PPARGC1BQ86YN6 1023 aaKnown RBP23.02■■□□□ 1.28
C4A-243ENST00000428956 LOC105371045A0A1W2PR82 267 aa22.93■■□□□ 1.26
C4A-243ENST00000428956 ABCC9O60706 1549 aa22.78■■□□□ 1.24
C4A-243ENST00000428956 HNRNPUL2Q1KMD3 747 aaKnown RBP22.73■■□□□ 1.23
C4A-243ENST00000428956 ITGAEP38570 1179 aa22.7■■□□□ 1.22
C4A-243ENST00000428956 DAXXQ9UER7 740 aaPredicted RBP22.67■■□□□ 1.22
C4A-243ENST00000428956 DIEXFQ68CQ4 756 aaKnown RBP22.64■■□□□ 1.22
C4A-243ENST00000428956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.54■■□□□ 1.2
C4A-243ENST00000428956 POLR3GLQ9BT43 218 aa22.47■■□□□ 1.19
C4A-243ENST00000428956 PABPN1Q86U42 306 aaKnown RBP eCLIP22.37■■□□□ 1.17
C4A-243ENST00000428956 MYT1LQ9UL68 1186 aa22.34■■□□□ 1.17
C4A-243ENST00000428956 RTL5Q5HYW3 569 aaPredicted RBP22.29■■□□□ 1.16
C4A-243ENST00000428956 FAM50AQ14320 339 aaKnown RBP22.26■■□□□ 1.15
C4A-243ENST00000428956 ZNF316A6NFI3 1004 aaPredicted RBP22.2■■□□□ 1.14
C4A-243ENST00000428956 GTF3C3Q9Y5Q9 886 aa22.17■■□□□ 1.14
C4A-243ENST00000428956 ANP32CO43423 234 aa22.16■■□□□ 1.14
C4A-243ENST00000428956 TRIM52Q96A61 297 aa22.13■■□□□ 1.13
C4A-243ENST00000428956 CNGB1Q14028 1251 aaPredicted RBP22.1■■□□□ 1.13
C4A-243ENST00000428956 CLSPNQ9HAW4 1339 aa22.08■■□□□ 1.12
C4A-243ENST00000428956 NEUROD1Q13562 356 aa22.07■■□□□ 1.12
C4A-243ENST00000428956 CDK11AQ9UQ88 783 aaPredicted RBP22.03■■□□□ 1.12
C4A-243ENST00000428956 ACIN1Q9UKV3 1341 aaKnown RBP22.02■■□□□ 1.12
C4A-243ENST00000428956 CSRNP3Q8WYN3 585 aa22.01■■□□□ 1.11
C4A-243ENST00000428956 DCAF1Q9Y4B6 1507 aa22.01■■□□□ 1.11
C4A-243ENST00000428956 SLC4A1APQ9BWU0 796 aaKnown RBP21.96■■□□□ 1.11
C4A-243ENST00000428956 BCANQ96GW7 911 aa21.88■■□□□ 1.09
C4A-243ENST00000428956 ZCCHC6Q5VYS8 1495 aaKnown RBP21.85■■□□□ 1.09
C4A-243ENST00000428956 ZNF326Q5BKZ1 582 aaKnown RBP21.75■■□□□ 1.07
C4A-243ENST00000428956 FBLN2P98095 1184 aa21.73■■□□□ 1.07
C4A-243ENST00000428956 ZBTB47Q9UFB7 747 aaPredicted RBP21.69■■□□□ 1.06
C4A-243ENST00000428956 ANP32AP39687 249 aaKnown RBP21.66■■□□□ 1.06
C4A-243ENST00000428956 CANXP27824 592 aaKnown RBP21.59■■□□□ 1.05
C4A-243ENST00000428956 TONSLQ96HA7 1378 aa21.59■■□□□ 1.05
C4A-243ENST00000428956 SCRIBQ14160 1630 aa21.57■■□□□ 1.04
C4A-243ENST00000428956 NEFMP07197 916 aa21.55■■□□□ 1.04
C4A-243ENST00000428956 CCDC180Q9P1Z9 1646 aa21.55■■□□□ 1.04
C4A-243ENST00000428956 P3H3Q8IVL6 736 aa21.55■■□□□ 1.04
C4A-243ENST00000428956 FKBP8Q14318 412 aa21.48■■□□□ 1.03
C4A-243ENST00000428956 RB1CC1Q8TDY2 1594 aa21.45■■□□□ 1.02
C4A-243ENST00000428956 EEA1Q15075 1411 aa21.4■■□□□ 1.02
C4A-243ENST00000428956 HNRNPUQ00839 825 aaKnown RBP eCLIP21.39■■□□□ 1.02
C4A-243ENST00000428956 ZNF777Q9ULD5 760 aaPredicted RBP21.37■■□□□ 1.01
C4A-243ENST00000428956 DDX10Q13206 875 aaKnown RBP21.36■■□□□ 1.01
C4A-243ENST00000428956 NPM1P06748 294 aaKnown RBP eCLIP21.3■■□□□ 11e-9■■■■■ 69
C4A-243ENST00000428956 CLIP1P30622 1438 aa21.29■■□□□ 1
C4A-243ENST00000428956 ARID3CA6NKF2 412 aa21.29■■□□□ 1
C4A-243ENST00000428956 NPM2Q86SE8 214 aaKnown RBP21.28■■□□□ 1
C4A-243ENST00000428956 UPF2Q9HAU5 1272 aaKnown RBP21.28■■□□□ 1
C4A-243ENST00000428956 FAM9BQ8IZU0 186 aa21.24■□□□□ 0.99
C4A-243ENST00000428956 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.24■□□□□ 0.99
C4A-243ENST00000428956 ANP32BQ92688 251 aaKnown RBP21.23■□□□□ 0.99
C4A-243ENST00000428956 GOLGA3Q08378 1498 aa21.22■□□□□ 0.99
C4A-243ENST00000428956 TMC1Q8TDI8 760 aa21.21■□□□□ 0.99
C4A-243ENST00000428956 CCDC136Q96JN2 1154 aa21.2■□□□□ 0.98
C4A-243ENST00000428956 SCAF1Q9H7N4 1312 aaKnown RBP21.19■□□□□ 0.98
C4A-243ENST00000428956 MTUS2Q5JR59 1369 aa21.18■□□□□ 0.98
C4A-243ENST00000428956 MIER1Q8N108 512 aa21.18■□□□□ 0.98
C4A-243ENST00000428956 ESF1Q9H501 851 aaKnown RBP21.15■□□□□ 0.98
C4A-243ENST00000428956 CEP162Q5TB80 1403 aa21.15■□□□□ 0.98
C4A-243ENST00000428956 MRS2Q9HD23 443 aa21.15■□□□□ 0.98
C4A-243ENST00000428956 RSF1Q96T23 1441 aaPredicted RBP21.14■□□□□ 0.98
C4A-243ENST00000428956 MYO15BQ96JP2 1530 aa21.13■□□□□ 0.97
C4A-243ENST00000428956 SLC24A1O60721 1099 aa21.12■□□□□ 0.97
C4A-243ENST00000428956 HSP90AA1P07900 732 aaKnown RBP21.11■□□□□ 0.97
C4A-243ENST00000428956 EIF4G2P78344 907 aaKnown RBP eCLIP21.1■□□□□ 0.97
C4A-243ENST00000428956 TSPY4P0CV99 314 aa21.09■□□□□ 0.97
C4A-243ENST00000428956 TSPY10P0CW01 314 aa21.09■□□□□ 0.97
C4A-243ENST00000428956 TNIKQ9UKE5 1360 aa21.08■□□□□ 0.97
C4A-243ENST00000428956 NACADO15069 1562 aa21.08■□□□□ 0.97
C4A-243ENST00000428956 WDR43Q15061 677 aaKnown RBP eCLIP21.07■□□□□ 0.96
C4A-243ENST00000428956 CHIC2Q9UKJ5 165 aa21.07■□□□□ 0.96
C4A-243ENST00000428956 BCL11AQ9H165 835 aa21.04■□□□□ 0.96
C4A-243ENST00000428956 CEP164Q9UPV0 1460 aa21.01■□□□□ 0.95
C4A-243ENST00000428956 WRNQ14191 1432 aaPredicted RBP eCLIP20.99■□□□□ 0.959e-14■■■■■ 43.9
C4A-243ENST00000428956 CHGAP10645 457 aaKnown RBP20.99■□□□□ 0.95
C4A-243ENST00000428956 STAG3Q9UJ98 1225 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 154 ms