RNA–Protein interactions for RNA: ENST00000378549.5

ITM2B-201, Transcript of integral membrane protein 2B, humanhuman

TSL 5 BASIC

Gene ITM2B, Length 805 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITM2B-201ENST00000378549 NISCHQ9Y2I1 1504 aa41.42■■■■■ 4.22
ITM2B-201ENST00000378549 CCDC180Q9P1Z9 1646 aa36.83■■■■□ 3.49
ITM2B-201ENST00000378549 ABCC9O60706 1549 aa35.64■■■■□ 3.3
ITM2B-201ENST00000378549 ZCCHC6Q5VYS8 1495 aaKnown RBP34.58■■■■□ 3.13
ITM2B-201ENST00000378549 NACADO15069 1562 aa34.49■■■■□ 3.11
ITM2B-201ENST00000378549 RB1CC1Q8TDY2 1594 aa34.48■■■■□ 3.11
ITM2B-201ENST00000378549 DCAF8L2P0C7V8 631 aa34.44■■■■□ 3.1
ITM2B-201ENST00000378549 MYO15BQ96JP2 1530 aa34.34■■■■□ 3.09
ITM2B-201ENST00000378549 DCAF1Q9Y4B6 1507 aa34.3■■■■□ 3.08
ITM2B-201ENST00000378549 UNC13AQ9UPW8 1703 aa33.81■■■■□ 3
ITM2B-201ENST00000378549 SCRIBQ14160 1630 aa33.58■■■□□ 2.97
ITM2B-201ENST00000378549 BICRAQ9NZM4 1560 aa33.37■■■□□ 2.93
ITM2B-201ENST00000378549 PABPN1Q86U42 306 aaKnown RBP eCLIP33.28■■■□□ 2.92
ITM2B-201ENST00000378549 SHROOM4Q9ULL8 1493 aa33.08■■■□□ 2.89
ITM2B-201ENST00000378549 EIF4G1Q04637 1599 aaKnown RBP32.49■■■□□ 2.79
ITM2B-201ENST00000378549 DNAJC5BQ9UF47 199 aa32.32■■■□□ 2.76
ITM2B-201ENST00000378549 CC2D2AQ9P2K1 1620 aa32.3■■■□□ 2.76
ITM2B-201ENST00000378549 CECR2Q9BXF3 1484 aa32.19■■■□□ 2.74
ITM2B-201ENST00000378549 SMARCA4P51532 1647 aa32.14■■■□□ 2.74
ITM2B-201ENST00000378549 BAZ1AQ9NRL2 1556 aaPredicted RBP32.13■■■□□ 2.73
ITM2B-201ENST00000378549 MROH2BQ7Z745 1585 aa31.91■■■□□ 2.7
ITM2B-201ENST00000378549 SMARCA2P51531 1590 aa31.86■■■□□ 2.69
ITM2B-201ENST00000378549 ATAD2BQ9ULI0 1458 aa31.81■■■□□ 2.68
ITM2B-201ENST00000378549 PEG3Q9GZU2 1588 aa31.8■■■□□ 2.68
ITM2B-201ENST00000378549 NCAPD3P42695 1498 aa31.74■■■□□ 2.67
ITM2B-201ENST00000378549 HMGXB3Q12766 1538 aa31.7■■■□□ 2.66
ITM2B-201ENST00000378549 WIZO95785 1651 aa31.65■■■□□ 2.66
ITM2B-201ENST00000378549 BAZ1BQ9UIG0 1483 aaKnown RBP31.62■■■□□ 2.65
ITM2B-201ENST00000378549 RSF1Q96T23 1441 aaPredicted RBP31.61■■■□□ 2.65
ITM2B-201ENST00000378549 TOP2AP11388 1531 aaKnown RBP31.32■■■□□ 2.6
ITM2B-201ENST00000378549 SUPT5HO00267 1087 aaKnown RBP31.02■■■□□ 2.56
ITM2B-201ENST00000378549 LAMC3Q9Y6N6 1575 aa30.96■■■□□ 2.55
ITM2B-201ENST00000378549 NESP48681 1621 aa30.91■■■□□ 2.54
ITM2B-201ENST00000378549 CCDC88BA6NC98 1476 aa30.88■■■□□ 2.53
ITM2B-201ENST00000378549 CADPSQ9ULU8 1353 aa30.82■■■□□ 2.52
ITM2B-201ENST00000378549 PRDM2Q13029 1718 aa30.75■■■□□ 2.51
ITM2B-201ENST00000378549 ERCC6Q03468 1493 aa30.75■■■□□ 2.51
ITM2B-201ENST00000378549 CFTRP13569 1480 aa30.72■■■□□ 2.51
ITM2B-201ENST00000378549 KIF21AQ7Z4S6 1674 aa30.69■■■□□ 2.5
ITM2B-201ENST00000378549 PDS5BQ9NTI5 1447 aa30.67■■■□□ 2.5
ITM2B-201ENST00000378549 FANCD2Q9BXW9 1451 aa30.51■■■□□ 2.48
ITM2B-201ENST00000378549 CEP164Q9UPV0 1460 aa30.49■■■□□ 2.47
ITM2B-201ENST00000378549 THOC2Q8NI27 1593 aaKnown RBP30.46■■■□□ 2.47
ITM2B-201ENST00000378549 MRC2Q9UBG0 1479 aa30.37■■■□□ 2.45
ITM2B-201ENST00000378549 CUX2O14529 1486 aa30.3■■■□□ 2.44
ITM2B-201ENST00000378549 WDR62O43379 1518 aa30.27■■■□□ 2.44
ITM2B-201ENST00000378549 URB2Q14146 1524 aaKnown RBP30.18■■■□□ 2.42
ITM2B-201ENST00000378549 ABCC8Q09428 1581 aa30.1■■■□□ 2.41
ITM2B-201ENST00000378549 DNMBPQ6XZF7 1577 aa30.1■■■□□ 2.41
ITM2B-201ENST00000378549 TOPBP1Q92547 1522 aa30.06■■■□□ 2.4
ITM2B-201ENST00000378549 CUX1P39880 1505 aa29.94■■■□□ 2.38
ITM2B-201ENST00000378549 WRNQ14191 1432 aaPredicted RBP eCLIP29.85■■■□□ 2.37
ITM2B-201ENST00000378549 BIVM-ERCC5R4GMW8 1640 aa29.83■■■□□ 2.37
ITM2B-201ENST00000378549 POLA1P09884 1462 aaPredicted RBP29.82■■■□□ 2.36
ITM2B-201ENST00000378549 IFT140Q96RY7 1462 aa29.81■■■□□ 2.36
ITM2B-201ENST00000378549 TOP2BQ02880 1626 aa29.81■■■□□ 2.36
ITM2B-201ENST00000378549 FGD5Q6ZNL6 1462 aa29.8■■■□□ 2.36
ITM2B-201ENST00000378549 SYNJ1O43426 1573 aa29.8■■■□□ 2.36
ITM2B-201ENST00000378549 TARBP1Q13395 1621 aaKnown RBP29.74■■■□□ 2.35
ITM2B-201ENST00000378549 SOGA1O94964 1423 aa29.68■■■□□ 2.34
ITM2B-201ENST00000378549 RAD54L2Q9Y4B4 1467 aa29.66■■■□□ 2.34
ITM2B-201ENST00000378549 WDR97A6NE52 1622 aa29.63■■■□□ 2.33
ITM2B-201ENST00000378549 ZNF608Q9ULD9 1512 aaPredicted RBP29.62■■■□□ 2.33
ITM2B-201ENST00000378549 EIF4G3O43432 1585 aaKnown RBP29.62■■■□□ 2.33
ITM2B-201ENST00000378549 ABCA10Q8WWZ4 1543 aa29.52■■■□□ 2.32
ITM2B-201ENST00000378549 AQRO60306 1485 aaKnown RBP eCLIP29.48■■■□□ 2.318e-8■■■□□ 19
ITM2B-201ENST00000378549 TDRD9Q8NDG6 1382 aaKnown RBP29.45■■■□□ 2.31
ITM2B-201ENST00000378549 ABCA5Q8WWZ7 1642 aa29.44■■■□□ 2.3
ITM2B-201ENST00000378549 PBRM1Q86U86 1689 aa29.43■■■□□ 2.3
ITM2B-201ENST00000378549 GAPVD1Q14C86 1478 aa29.37■■■□□ 2.29
ITM2B-201ENST00000378549 GRIN2BQ13224 1484 aa29.33■■■□□ 2.29
ITM2B-201ENST00000378549 TRIM41Q8WV44 630 aa29.3■■■□□ 2.28
ITM2B-201ENST00000378549 SNAPC4Q5SXM2 1469 aa29.26■■■□□ 2.27
ITM2B-201ENST00000378549 MAGI1Q96QZ7 1491 aaPredicted RBP29.25■■■□□ 2.27
ITM2B-201ENST00000378549 CHD1O14646 1710 aa29.25■■■□□ 2.27
ITM2B-201ENST00000378549 KIF27Q86VH2 1401 aa29.21■■■□□ 2.27
ITM2B-201ENST00000378549 ERICH3Q5RHP9 1530 aa29.2■■■□□ 2.27
ITM2B-201ENST00000378549 ADAMTS12P58397 1594 aa29.13■■■□□ 2.25
ITM2B-201ENST00000378549 SYNJ2O15056 1496 aa29.11■■■□□ 2.25
ITM2B-201ENST00000378549 FBLN2P98095 1184 aa29.08■■■□□ 2.25
ITM2B-201ENST00000378549 CHIC1Q5VXU3 224 aa29.07■■■□□ 2.24
ITM2B-201ENST00000378549 CUL7Q14999 1698 aa29.06■■■□□ 2.24
ITM2B-201ENST00000378549 CHMP7Q8WUX9 453 aaPredicted RBP29.04■■■□□ 2.24
ITM2B-201ENST00000378549 FHAD1B1AJZ9 1412 aa29.03■■■□□ 2.24
ITM2B-201ENST00000378549 OSCARQ8IYS5 282 aa29.03■■■□□ 2.24
ITM2B-201ENST00000378549 RUSC2Q8N2Y8 1516 aa28.97■■■□□ 2.23
ITM2B-201ENST00000378549 IGF1RP08069 1367 aa28.97■■■□□ 2.23
ITM2B-201ENST00000378549 GRIN2AQ12879 1464 aa28.97■■■□□ 2.23
ITM2B-201ENST00000378549 DNAJC5Q9H3Z4 198 aa28.94■■■□□ 2.22
ITM2B-201ENST00000378549 CARMIL1Q5VZK9 1371 aa28.85■■■□□ 2.21
ITM2B-201ENST00000378549 EEA1Q15075 1411 aa28.85■■■□□ 2.21
ITM2B-201ENST00000378549 CLASP1Q7Z460 1538 aa28.83■■■□□ 2.21
ITM2B-201ENST00000378549 CEP170Q5SW79 1584 aa28.83■■■□□ 2.21
ITM2B-201ENST00000378549 NUP160Q12769 1436 aa28.79■■■□□ 2.2
ITM2B-201ENST00000378549 RAPGEF2Q9Y4G8 1499 aa28.74■■■□□ 2.19
ITM2B-201ENST00000378549 CSRNP3Q8WYN3 585 aa28.69■■■□□ 2.18
ITM2B-201ENST00000378549 PRXQ9BXM0 1461 aa28.68■■■□□ 2.18
ITM2B-201ENST00000378549 FAM9AQ8IZU1 332 aaPredicted RBP28.67■■■□□ 2.18
ITM2B-201ENST00000378549 RIMBP3CA6NJZ7 1639 aa28.64■■■□□ 2.18
ITM2B-201ENST00000378549 RIMBP3BA6NNM3 1639 aa28.64■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms