Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 AC093323.1-202ENST00000635031 2045 ntBASIC27.55■■■□□ 2
CCDC144BQ3MJ40 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
CCDC144BQ3MJ40 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC27.54■■■□□ 2
CCDC144BQ3MJ40 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC27.54■■■□□ 2
CCDC144BQ3MJ40 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC27.54■■■□□ 2
CCDC144BQ3MJ40 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
CCDC144BQ3MJ40 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC27.53■■■□□ 2
CCDC144BQ3MJ40 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC27.53■■■□□ 2
CCDC144BQ3MJ40 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC27.53■■■□□ 2
CCDC144BQ3MJ40 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC27.53■■■□□ 2
CCDC144BQ3MJ40 RPS2P7-201ENST00000447334 885 ntBASIC27.53■■■□□ 2
CCDC144BQ3MJ40 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC27.53■■■□□ 2
CCDC144BQ3MJ40 THA1P-201ENST00000590384 1145 ntBASIC27.53■■■□□ 2
CCDC144BQ3MJ40 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC27.53■■■□□ 2
CCDC144BQ3MJ40 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 DUSP8P4-201ENST00000399538 1761 ntBASIC27.52■■■□□ 2
CCDC144BQ3MJ40 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CCDC144BQ3MJ40 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC27.51■■■□□ 2
CCDC144BQ3MJ40 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27.51■■□□□ 1.99
CCDC144BQ3MJ40 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
CCDC144BQ3MJ40 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CCDC144BQ3MJ40 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC27.5■■□□□ 1.99
CCDC144BQ3MJ40 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CCDC144BQ3MJ40 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC27.5■■□□□ 1.99
CCDC144BQ3MJ40 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CCDC144BQ3MJ40 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC27.49■■□□□ 1.99
CCDC144BQ3MJ40 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
CCDC144BQ3MJ40 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CCDC144BQ3MJ40 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC27.49■■□□□ 1.99
CCDC144BQ3MJ40 LONRF2P2-201ENST00000439212 571 ntBASIC27.49■■□□□ 1.99
CCDC144BQ3MJ40 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
CCDC144BQ3MJ40 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC144BQ3MJ40 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC27.48■■□□□ 1.99
CCDC144BQ3MJ40 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC144BQ3MJ40 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC27.48■■□□□ 1.99
CCDC144BQ3MJ40 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27.48■■□□□ 1.99
CCDC144BQ3MJ40 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC144BQ3MJ40 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
CCDC144BQ3MJ40 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 AC092803.2-201ENST00000564287 1899 ntBASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 RNF146-205ENST00000477776 762 ntTSL 3 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC27.47■■□□□ 1.99
CCDC144BQ3MJ40 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
CCDC144BQ3MJ40 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
CCDC144BQ3MJ40 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC27.46■■□□□ 1.99
CCDC144BQ3MJ40 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
CCDC144BQ3MJ40 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC27.46■■□□□ 1.99
CCDC144BQ3MJ40 MTURN-203ENST00000409688 843 ntTSL 2 BASIC27.46■■□□□ 1.99
CCDC144BQ3MJ40 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
CCDC144BQ3MJ40 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC27.45■■□□□ 1.98
CCDC144BQ3MJ40 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC27.45■■□□□ 1.98
CCDC144BQ3MJ40 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
CCDC144BQ3MJ40 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC144BQ3MJ40 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC144BQ3MJ40 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC144BQ3MJ40 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC144BQ3MJ40 AC239859.2-201ENST00000444165 318 ntBASIC27.44■■□□□ 1.98
CCDC144BQ3MJ40 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CCDC144BQ3MJ40 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.44■■□□□ 1.98
CCDC144BQ3MJ40 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC27.43■■□□□ 1.98
CCDC144BQ3MJ40 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CCDC144BQ3MJ40 AL356441.2-201ENST00000443009 864 ntBASIC27.43■■□□□ 1.98
CCDC144BQ3MJ40 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC144BQ3MJ40 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC144BQ3MJ40 TK2-216ENST00000564917 1156 ntTSL 3 BASIC27.42■■□□□ 1.98
CCDC144BQ3MJ40 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC27.42■■□□□ 1.98
CCDC144BQ3MJ40 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
CCDC144BQ3MJ40 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC27.42■■□□□ 1.98
CCDC144BQ3MJ40 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
CCDC144BQ3MJ40 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC27.4■■□□□ 1.98
CCDC144BQ3MJ40 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC144BQ3MJ40 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CCDC144BQ3MJ40 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
CCDC144BQ3MJ40 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC27.39■■□□□ 1.98
CCDC144BQ3MJ40 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.98
CCDC144BQ3MJ40 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
CCDC144BQ3MJ40 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.39■■□□□ 1.97
CCDC144BQ3MJ40 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.38■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms