Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CKS1BP61024 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CKS1BP61024 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC16.37■□□□□ 0.21
CKS1BP61024 AP006261.1-201ENST00000584783 668 ntBASIC16.37■□□□□ 0.21
CKS1BP61024 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CKS1BP61024 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.37■□□□□ 0.21
CKS1BP61024 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC16.37■□□□□ 0.21
CKS1BP61024 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CKS1BP61024 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CKS1BP61024 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CKS1BP61024 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CKS1BP61024 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CKS1BP61024 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CKS1BP61024 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CKS1BP61024 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CKS1BP61024 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CKS1BP61024 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CKS1BP61024 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CKS1BP61024 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CKS1BP61024 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CKS1BP61024 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
CKS1BP61024 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CKS1BP61024 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CKS1BP61024 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CKS1BP61024 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CKS1BP61024 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CKS1BP61024 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CKS1BP61024 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CKS1BP61024 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC16.35■□□□□ 0.21
CKS1BP61024 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CKS1BP61024 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CKS1BP61024 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CKS1BP61024 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.34■□□□□ 0.21
CKS1BP61024 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CKS1BP61024 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
CKS1BP61024 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.33■□□□□ 0.2
CKS1BP61024 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CKS1BP61024 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CKS1BP61024 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CKS1BP61024 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CKS1BP61024 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CKS1BP61024 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CKS1BP61024 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CKS1BP61024 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CKS1BP61024 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CKS1BP61024 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CKS1BP61024 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
CKS1BP61024 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CKS1BP61024 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CKS1BP61024 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC16.31■□□□□ 0.2
CKS1BP61024 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CKS1BP61024 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC16.31■□□□□ 0.2
CKS1BP61024 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 ABCB10P4-201ENST00000566803 2184 ntBASIC16.31■□□□□ 0.2
CKS1BP61024 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC16.31■□□□□ 0.2
CKS1BP61024 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
CKS1BP61024 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CKS1BP61024 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC16.31■□□□□ 0.2
CKS1BP61024 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CKS1BP61024 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC16.3■□□□□ 0.2
CKS1BP61024 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC16.3■□□□□ 0.2
CKS1BP61024 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CKS1BP61024 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CKS1BP61024 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CKS1BP61024 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CKS1BP61024 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC16.3■□□□□ 0.2
CKS1BP61024 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC16.3■□□□□ 0.2
CKS1BP61024 AC044849.2-201ENST00000606596 710 ntBASIC16.3■□□□□ 0.2
CKS1BP61024 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CKS1BP61024 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CKS1BP61024 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC16.3■□□□□ 0.2
CKS1BP61024 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.3■□□□□ 0.2
CKS1BP61024 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC16.3■□□□□ 0.2
CKS1BP61024 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 PEX7-203ENST00000541292 945 ntTSL 5 BASIC16.29■□□□□ 0.2
CKS1BP61024 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC16.29■□□□□ 0.2
CKS1BP61024 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CKS1BP61024 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CKS1BP61024 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CKS1BP61024 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 671.2 ms