RNA–Protein interactions for RNA: ENST00000458013.6

SNX27-204, Transcript of sorting nexin family member 27, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SNX27, Length 6,403 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX27-204ENST00000458013 DCAF8L2P0C7V8 631 aa34.22■■■■□ 3.07
SNX27-204ENST00000458013 EHMT2Q96KQ7 1210 aa32.47■■■□□ 2.79
SNX27-204ENST00000458013 SUPT5HO00267 1087 aaKnown RBP32.46■■■□□ 2.79
SNX27-204ENST00000458013 SHROOM4Q9ULL8 1493 aa31.89■■■□□ 2.7
SNX27-204ENST00000458013 TTBK1Q5TCY1 1321 aaPredicted RBP31.33■■■□□ 2.61
SNX27-204ENST00000458013 PELP1Q8IZL8 1130 aaKnown RBP31.15■■■□□ 2.58
SNX27-204ENST00000458013 FAM9AQ8IZU1 332 aaPredicted RBP30.92■■■□□ 2.54
SNX27-204ENST00000458013 APLP2Q06481 763 aa30.79■■■□□ 2.52
SNX27-204ENST00000458013 RANGAP1P46060 587 aaPredicted RBP30.73■■■□□ 2.51
SNX27-204ENST00000458013 PCGF6Q9BYE7 350 aa30.63■■■□□ 2.49
SNX27-204ENST00000458013 ERICH6Q7L0X2 663 aa30.48■■■□□ 2.47
SNX27-204ENST00000458013 NISCHQ9Y2I1 1504 aa30.43■■■□□ 2.46
SNX27-204ENST00000458013 ATP1B4Q9UN42 357 aaPredicted RBP30.25■■■□□ 2.43
SNX27-204ENST00000458013 YTHDC1Q96MU7 727 aaKnown RBP30.15■■■□□ 2.42
SNX27-204ENST00000458013 CCER1Q8TC90 406 aaPredicted RBP30.06■■■□□ 2.4
SNX27-204ENST00000458013 CENPBP07199 599 aaPredicted RBP29.97■■■□□ 2.39
SNX27-204ENST00000458013 PPARGC1BQ86YN6 1023 aaKnown RBP29.88■■■□□ 2.37
SNX27-204ENST00000458013 TRIM41Q8WV44 630 aa29.66■■■□□ 2.34
SNX27-204ENST00000458013 MYT1Q01538 1121 aa29.64■■■□□ 2.34
SNX27-204ENST00000458013 UBTFP17480 764 aaKnown RBP29.58■■■□□ 2.33
SNX27-204ENST00000458013 NEFLP07196 543 aa29.53■■■□□ 2.32
SNX27-204ENST00000458013 ZEB1P37275 1124 aaPredicted RBP29.47■■■□□ 2.31
SNX27-204ENST00000458013 CNGB1Q14028 1251 aaPredicted RBP29.35■■■□□ 2.29
SNX27-204ENST00000458013 POLR3GLQ9BT43 218 aa29.32■■■□□ 2.28
SNX27-204ENST00000458013 ITGAEP38570 1179 aa29.2■■■□□ 2.27
SNX27-204ENST00000458013 CHIC1Q5VXU3 224 aa29.05■■■□□ 2.24
SNX27-204ENST00000458013 MYT1LQ9UL68 1186 aa29.04■■■□□ 2.24
SNX27-204ENST00000458013 DAXXQ9UER7 740 aaPredicted RBP28.94■■■□□ 2.22
SNX27-204ENST00000458013 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.86■■■□□ 2.21
SNX27-204ENST00000458013 HNRNPUL2Q1KMD3 747 aaKnown RBP28.86■■■□□ 2.21
SNX27-204ENST00000458013 SLC4A1APQ9BWU0 796 aaKnown RBP28.72■■■□□ 2.19
SNX27-204ENST00000458013 LOC105371045A0A1W2PR82 267 aa28.7■■■□□ 2.19
SNX27-204ENST00000458013 TRIM26Q12899 539 aaPredicted RBP28.7■■■□□ 2.19
SNX27-204ENST00000458013 HRCP23327 699 aa28.7■■■□□ 2.19
SNX27-204ENST00000458013 BCANQ96GW7 911 aa28.35■■■□□ 2.13
SNX27-204ENST00000458013 CLSPNQ9HAW4 1339 aa28.35■■■□□ 2.13
SNX27-204ENST00000458013 ZNF316A6NFI3 1004 aaPredicted RBP28.35■■■□□ 2.13
SNX27-204ENST00000458013 BCL11AQ9H165 835 aa28.2■■■□□ 2.1
SNX27-204ENST00000458013 RTL5Q5HYW3 569 aaPredicted RBP28.19■■■□□ 2.1
SNX27-204ENST00000458013 DIEXFQ68CQ4 756 aaKnown RBP28.15■■■□□ 2.1
SNX27-204ENST00000458013 NEUROD1Q13562 356 aa28.13■■■□□ 2.09
SNX27-204ENST00000458013 FAM50AQ14320 339 aaKnown RBP28.12■■■□□ 2.09
SNX27-204ENST00000458013 TRIM52Q96A61 297 aa28.02■■■□□ 2.08
SNX27-204ENST00000458013 ZNF326Q5BKZ1 582 aaKnown RBP27.96■■■□□ 2.07
SNX27-204ENST00000458013 SLC24A1O60721 1099 aa27.87■■■□□ 2.05
SNX27-204ENST00000458013 GTF3C3Q9Y5Q9 886 aa27.86■■■□□ 2.05
SNX27-204ENST00000458013 ARID3CA6NKF2 412 aa27.63■■■□□ 2.01
SNX27-204ENST00000458013 CDK11AQ9UQ88 783 aaPredicted RBP27.58■■■□□ 2.01
SNX27-204ENST00000458013 CANXP27824 592 aaKnown RBP27.57■■■□□ 2
SNX27-204ENST00000458013 ANP32CO43423 234 aa27.56■■■□□ 2
SNX27-204ENST00000458013 NPM2Q86SE8 214 aaKnown RBP27.54■■■□□ 2
SNX27-204ENST00000458013 ZBTB47Q9UFB7 747 aaPredicted RBP27.53■■■□□ 2
SNX27-204ENST00000458013 PABPN1Q86U42 306 aaKnown RBP eCLIP27.49■■□□□ 1.99
SNX27-204ENST00000458013 FBLN2P98095 1184 aa27.47■■□□□ 1.99
SNX27-204ENST00000458013 P3H3Q8IVL6 736 aa27.39■■□□□ 1.98
SNX27-204ENST00000458013 PLPPR3Q6T4P5 718 aa27.27■■□□□ 1.96
SNX27-204ENST00000458013 ZNF777Q9ULD5 760 aaPredicted RBP27.18■■□□□ 1.94
SNX27-204ENST00000458013 EIF5BO60841 1220 aaKnown RBP27.17■■□□□ 1.94
SNX27-204ENST00000458013 SALL2Q9Y467 1007 aaPredicted RBP27.13■■□□□ 1.93
SNX27-204ENST00000458013 ANP32AP39687 249 aaKnown RBP27.13■■□□□ 1.93
SNX27-204ENST00000458013 ARXQ96QS3 562 aa27.09■■□□□ 1.93
SNX27-204ENST00000458013 FKBP8Q14318 412 aa27.07■■□□□ 1.92
SNX27-204ENST00000458013 ACIN1Q9UKV3 1341 aaKnown RBP27.06■■□□□ 1.92
SNX27-204ENST00000458013 NEFMP07197 916 aa27.05■■□□□ 1.92
SNX27-204ENST00000458013 ABCC9O60706 1549 aa27.01■■□□□ 1.91
SNX27-204ENST00000458013 NBR1Q14596 966 aa26.97■■□□□ 1.91
SNX27-204ENST00000458013 FAM9BQ8IZU0 186 aa26.94■■□□□ 1.9
SNX27-204ENST00000458013 CHGAP10645 457 aaKnown RBP26.94■■□□□ 1.9
SNX27-204ENST00000458013 HSP90AA1P07900 732 aaKnown RBP26.91■■□□□ 1.9
SNX27-204ENST00000458013 SENP3Q9H4L4 574 aaPredicted RBP26.9■■□□□ 1.9
SNX27-204ENST00000458013 HNRNPUQ00839 825 aaKnown RBP eCLIP26.81■■□□□ 1.88
SNX27-204ENST00000458013 IRX6P78412 446 aaPredicted RBP26.81■■□□□ 1.88
SNX27-204ENST00000458013 DDX10Q13206 875 aaKnown RBP26.77■■□□□ 1.88
SNX27-204ENST00000458013 PLEKHG5O94827 1062 aa26.74■■□□□ 1.87
SNX27-204ENST00000458013 ANP32BQ92688 251 aaKnown RBP26.73■■□□□ 1.87
SNX27-204ENST00000458013 STAG3Q9UJ98 1225 aa26.71■■□□□ 1.87
SNX27-204ENST00000458013 SENP3-EIF4A1A0A087X0R7 540 aa26.7■■□□□ 1.86
SNX27-204ENST00000458013 HIRIP3Q9BW71 556 aaPredicted RBP26.67■■□□□ 1.86
SNX27-204ENST00000458013 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.65■■□□□ 1.86
SNX27-204ENST00000458013 CHIC2Q9UKJ5 165 aa26.65■■□□□ 1.86
SNX27-204ENST00000458013 SCAF1Q9H7N4 1312 aaKnown RBP26.61■■□□□ 1.85
SNX27-204ENST00000458013 TONSLQ96HA7 1378 aa26.59■■□□□ 1.85
SNX27-204ENST00000458013 ESF1Q9H501 851 aaKnown RBP26.58■■□□□ 1.85
SNX27-204ENST00000458013 UPF2Q9HAU5 1272 aaKnown RBP26.57■■□□□ 1.84
SNX27-204ENST00000458013 A0A0G2JS52 829 aa26.56■■□□□ 1.84
SNX27-204ENST00000458013 KDM2AQ9Y2K7 1162 aa26.56■■□□□ 1.84
SNX27-204ENST00000458013 ZBTB7CA1YPR0 619 aa26.55■■□□□ 1.84
SNX27-204ENST00000458013 CCDC136Q96JN2 1154 aa26.52■■□□□ 1.84
SNX27-204ENST00000458013 CSRNP3Q8WYN3 585 aa26.48■■□□□ 1.83
SNX27-204ENST00000458013 TPRNQ4KMQ1 711 aa26.47■■□□□ 1.83
SNX27-204ENST00000458013 TMC1Q8TDI8 760 aa26.44■■□□□ 1.82
SNX27-204ENST00000458013 WDR43Q15061 677 aaKnown RBP eCLIP26.38■■□□□ 1.81
SNX27-204ENST00000458013 MRS2Q9HD23 443 aa26.33■■□□□ 1.81
SNX27-204ENST00000458013 MIER1Q8N108 512 aa26.31■■□□□ 1.8
SNX27-204ENST00000458013 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.28■■□□□ 1.8
SNX27-204ENST00000458013 C14orf37Q86TY3 774 aa26.25■■□□□ 1.79
SNX27-204ENST00000458013 TULP1O00294 542 aaPredicted RBP26.23■■□□□ 1.79
SNX27-204ENST00000458013 GLIPR1L2Q4G1C9 344 aa26.21■■□□□ 1.79
SNX27-204ENST00000458013 TAOK2Q9UL54 1235 aa26.2■■□□□ 1.78
SNX27-204ENST00000458013 SCRIBQ14160 1630 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms