Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC29■■■□□ 2.23
COL1A1P02452 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
COL1A1P02452 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
COL1A1P02452 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC29■■■□□ 2.23
COL1A1P02452 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC28.99■■■□□ 2.23
COL1A1P02452 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
COL1A1P02452 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.99■■■□□ 2.23
COL1A1P02452 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
COL1A1P02452 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
COL1A1P02452 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
COL1A1P02452 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
COL1A1P02452 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
COL1A1P02452 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC28.98■■■□□ 2.23
COL1A1P02452 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
COL1A1P02452 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC28.98■■■□□ 2.23
COL1A1P02452 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC28.97■■■□□ 2.23
COL1A1P02452 AC096887.2-201ENST00000623443 1957 ntBASIC28.97■■■□□ 2.23
COL1A1P02452 BX664725.1-201ENST00000438252 379 ntBASIC28.97■■■□□ 2.23
COL1A1P02452 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
COL1A1P02452 ERN1-208ENST00000606895 2068 ntBASIC28.96■■■□□ 2.23
COL1A1P02452 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
COL1A1P02452 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
COL1A1P02452 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.96■■■□□ 2.23
COL1A1P02452 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC28.96■■■□□ 2.23
COL1A1P02452 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
COL1A1P02452 AL121749.1-202ENST00000609313 2153 ntBASIC28.96■■■□□ 2.23
COL1A1P02452 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
COL1A1P02452 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC28.96■■■□□ 2.23
COL1A1P02452 KRT125P-201ENST00000546827 989 ntBASIC28.96■■■□□ 2.23
COL1A1P02452 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.95■■■□□ 2.23
COL1A1P02452 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.23
COL1A1P02452 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
COL1A1P02452 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.23
COL1A1P02452 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC28.95■■■□□ 2.22
COL1A1P02452 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
COL1A1P02452 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC28.95■■■□□ 2.22
COL1A1P02452 AC120024.1-201ENST00000562672 995 ntBASIC28.95■■■□□ 2.22
COL1A1P02452 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC28.95■■■□□ 2.22
COL1A1P02452 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.22
COL1A1P02452 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.94■■■□□ 2.22
COL1A1P02452 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
COL1A1P02452 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC28.94■■■□□ 2.22
COL1A1P02452 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC28.94■■■□□ 2.22
COL1A1P02452 AC008406.3-201ENST00000620001 1374 ntBASIC28.94■■■□□ 2.22
COL1A1P02452 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
COL1A1P02452 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
COL1A1P02452 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC28.93■■■□□ 2.22
COL1A1P02452 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
COL1A1P02452 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC28.92■■■□□ 2.22
COL1A1P02452 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC28.92■■■□□ 2.22
COL1A1P02452 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
COL1A1P02452 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
COL1A1P02452 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
COL1A1P02452 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
COL1A1P02452 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
COL1A1P02452 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.91■■■□□ 2.22
COL1A1P02452 KRT18P24-201ENST00000344739 1156 ntBASIC28.91■■■□□ 2.22
COL1A1P02452 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC28.91■■■□□ 2.22
COL1A1P02452 MIR4787-201ENST00000607364 84 ntBASIC28.91■■■□□ 2.22
COL1A1P02452 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
COL1A1P02452 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC28.91■■■□□ 2.22
COL1A1P02452 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
COL1A1P02452 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
COL1A1P02452 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
COL1A1P02452 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC28.9■■■□□ 2.22
COL1A1P02452 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
COL1A1P02452 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
COL1A1P02452 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC28.89■■■□□ 2.22
COL1A1P02452 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
COL1A1P02452 UNC93B8-201ENST00000511903 705 ntBASIC28.89■■■□□ 2.22
COL1A1P02452 MIR4281-201ENST00000580852 62 ntBASIC28.89■■■□□ 2.22
COL1A1P02452 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.89■■■□□ 2.22
COL1A1P02452 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
COL1A1P02452 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC28.88■■■□□ 2.21
COL1A1P02452 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC28.88■■■□□ 2.21
COL1A1P02452 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
COL1A1P02452 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.87■■■□□ 2.21
COL1A1P02452 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
COL1A1P02452 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
COL1A1P02452 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
COL1A1P02452 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC28.87■■■□□ 2.21
COL1A1P02452 KRT16P3-201ENST00000439127 1283 ntBASIC28.87■■■□□ 2.21
COL1A1P02452 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.87■■■□□ 2.21
COL1A1P02452 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC28.87■■■□□ 2.21
COL1A1P02452 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC28.87■■■□□ 2.21
COL1A1P02452 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
COL1A1P02452 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
COL1A1P02452 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC28.86■■■□□ 2.21
COL1A1P02452 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL1A1P02452 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL1A1P02452 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC28.85■■■□□ 2.21
COL1A1P02452 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC28.85■■■□□ 2.21
COL1A1P02452 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
COL1A1P02452 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
COL1A1P02452 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
COL1A1P02452 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
COL1A1P02452 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC28.85■■■□□ 2.21
COL1A1P02452 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC28.84■■■□□ 2.21
COL1A1P02452 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
COL1A1P02452 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms