Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.62■□□□□ 0.25
VPS11Q9H270 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VPS11Q9H270 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS11Q9H270 AC139887.3-201ENST00000568585 713 ntBASIC16.62■□□□□ 0.25
VPS11Q9H270 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS11Q9H270 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS11Q9H270 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS11Q9H270 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS11Q9H270 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
VPS11Q9H270 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VPS11Q9H270 KRT8P39-201ENST00000396270 1433 ntBASIC16.62■□□□□ 0.25
VPS11Q9H270 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS11Q9H270 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS11Q9H270 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS11Q9H270 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
VPS11Q9H270 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
VPS11Q9H270 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS11Q9H270 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS11Q9H270 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS11Q9H270 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS11Q9H270 MIR4492-201ENST00000581627 80 ntBASIC16.61■□□□□ 0.25
VPS11Q9H270 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS11Q9H270 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS11Q9H270 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
VPS11Q9H270 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS11Q9H270 PI4KAP1-204ENST00000612579 1703 ntBASIC16.61■□□□□ 0.25
VPS11Q9H270 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS11Q9H270 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
VPS11Q9H270 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS11Q9H270 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
VPS11Q9H270 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS11Q9H270 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS11Q9H270 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS11Q9H270 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS11Q9H270 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS11Q9H270 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 AC068418.2-201ENST00000577309 3703 ntBASIC16.6■□□□□ 0.25
VPS11Q9H270 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 PTCHD3P3-201ENST00000403073 906 ntBASIC16.6■□□□□ 0.25
VPS11Q9H270 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS11Q9H270 KRT18P35-201ENST00000510488 1269 ntBASIC16.6■□□□□ 0.25
VPS11Q9H270 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS11Q9H270 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.6■□□□□ 0.25
VPS11Q9H270 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS11Q9H270 AC112504.1-201ENST00000623415 1841 ntBASIC16.6■□□□□ 0.25
VPS11Q9H270 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VPS11Q9H270 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VPS11Q9H270 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS11Q9H270 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS11Q9H270 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VPS11Q9H270 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS11Q9H270 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS11Q9H270 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS11Q9H270 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS11Q9H270 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS11Q9H270 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS11Q9H270 AC131009.4-201ENST00000624048 1740 ntBASIC16.59■□□□□ 0.25
VPS11Q9H270 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS11Q9H270 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS11Q9H270 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS11Q9H270 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
VPS11Q9H270 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS11Q9H270 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms