Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 HLA-H-201ENST00000383620 1096 ntBASIC15.12■□□□□ 0.01
LRFN1Q9P244 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 SPTSSB-204ENST00000617024 1292 ntBASIC15.12■□□□□ 0.01
LRFN1Q9P244 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.12■□□□□ 0.01
LRFN1Q9P244 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.12■□□□□ 0.01
LRFN1Q9P244 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LRFN1Q9P244 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AL158211.3-201ENST00000607385 239 ntBASIC15.11■□□□□ 0.01
LRFN1Q9P244 AC020765.3-201ENST00000613051 740 ntBASIC15.11■□□□□ 0.01
LRFN1Q9P244 AJ011932.1-201ENST00000621707 465 ntBASIC15.11■□□□□ 0.01
LRFN1Q9P244 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AL512652.2-201ENST00000625156 1716 ntBASIC15.11■□□□□ 0.01
LRFN1Q9P244 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AP001094.4-201ENST00000579008 2176 ntBASIC15.11■□□□□ 0.01
LRFN1Q9P244 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
LRFN1Q9P244 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LRFN1Q9P244 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRFN1Q9P244 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
LRFN1Q9P244 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.1■□□□□ 0.01
LRFN1Q9P244 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.1■□□□□ 0.01
LRFN1Q9P244 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRFN1Q9P244 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LRFN1Q9P244 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
LRFN1Q9P244 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.1■□□□□ 0.01
LRFN1Q9P244 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRFN1Q9P244 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRFN1Q9P244 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
LRFN1Q9P244 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LRFN1Q9P244 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
LRFN1Q9P244 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms