Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.35■□□□□ 0.85
SYNE4Q8N205 AL136982.4-201ENST00000437689 1740 ntBASIC20.35■□□□□ 0.85
SYNE4Q8N205 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SYNE4Q8N205 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SYNE4Q8N205 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.35■□□□□ 0.85
SYNE4Q8N205 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC20.35■□□□□ 0.85
SYNE4Q8N205 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SYNE4Q8N205 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SYNE4Q8N205 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SYNE4Q8N205 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SYNE4Q8N205 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SYNE4Q8N205 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 AP006294.1-201ENST00000415407 339 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 DFFBP1-201ENST00000433250 979 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 RPS2P32-201ENST00000439199 892 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 AC114501.2-201ENST00000439631 535 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 ACA64.2-201ENST00000459014 129 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 DOC2GP-202ENST00000514950 1163 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 AL162274.1-201ENST00000617191 1098 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 AL109936.8-201ENST00000641772 604 ntBASIC20.34■□□□□ 0.85
SYNE4Q8N205 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.34■□□□□ 0.85
SYNE4Q8N205 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SYNE4Q8N205 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE4Q8N205 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE4Q8N205 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE4Q8N205 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE4Q8N205 BTBD7P1-201ENST00000447253 1453 ntBASIC20.33■□□□□ 0.85
SYNE4Q8N205 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.85
SYNE4Q8N205 AC009053.2-201ENST00000563701 2365 ntBASIC20.33■□□□□ 0.85
SYNE4Q8N205 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
SYNE4Q8N205 AL512384.1-201ENST00000406683 331 ntBASIC20.33■□□□□ 0.85
SYNE4Q8N205 MIR1909-201ENST00000411312 80 ntBASIC20.33■□□□□ 0.85
SYNE4Q8N205 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC20.33■□□□□ 0.85
SYNE4Q8N205 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE4Q8N205 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.33■□□□□ 0.85
SYNE4Q8N205 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.33■□□□□ 0.85
SYNE4Q8N205 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE4Q8N205 AC008494.3-201ENST00000606615 944 ntBASIC20.33■□□□□ 0.85
SYNE4Q8N205 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SYNE4Q8N205 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SYNE4Q8N205 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SYNE4Q8N205 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.33■□□□□ 0.84
SYNE4Q8N205 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SYNE4Q8N205 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SYNE4Q8N205 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SYNE4Q8N205 HLA-A-202ENST00000376806 1854 ntBASIC20.33■□□□□ 0.84
SYNE4Q8N205 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SYNE4Q8N205 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 GGT3P-204ENST00000453783 1664 ntBASIC20.32■□□□□ 0.84
SYNE4Q8N205 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.32■□□□□ 0.84
SYNE4Q8N205 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 U82695.1-201ENST00000635752 1889 ntBASIC20.32■□□□□ 0.84
SYNE4Q8N205 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SYNE4Q8N205 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SYNE4Q8N205 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms