Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
RHBDD3Q9Y3P4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 AC073621.1-201ENST00000392730 636 ntBASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 KRT18P27-201ENST00000427733 1299 ntBASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 HNRNPDP1-201ENST00000439535 754 ntBASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 AC087163.2-201ENST00000457299 853 ntBASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 RPS15P9-201ENST00000494093 319 ntBASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 RN7SL510P-201ENST00000581311 263 ntBASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 AL691432.3-201ENST00000621860 400 ntBASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.52□□□□□ -0.09
RHBDD3Q9Y3P4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AC132872.4-202ENST00000622924 2756 ntBASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AC002310.6-201ENST00000624451 1377 ntBASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AL450487.1-201ENST00000426799 995 ntBASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AC079781.3-201ENST00000449110 356 ntBASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AF186996.4-201ENST00000467186 377 ntBASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AC136632.2-201ENST00000512891 861 ntBASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.51□□□□□ -0.09
RHBDD3Q9Y3P4 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 GGT3P-204ENST00000453783 1664 ntBASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
RHBDD3Q9Y3P4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms