Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.15■□□□□ 0.66
SF3A1Q15459 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SF3A1Q15459 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
SF3A1Q15459 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SF3A1Q15459 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.15■□□□□ 0.66
SF3A1Q15459 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC19.15■□□□□ 0.66
SF3A1Q15459 AC079781.3-201ENST00000449110 356 ntBASIC19.15■□□□□ 0.66
SF3A1Q15459 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.15■□□□□ 0.66
SF3A1Q15459 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.15■□□□□ 0.66
SF3A1Q15459 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.15■□□□□ 0.66
SF3A1Q15459 AC091167.2-201ENST00000579581 588 ntBASIC19.15■□□□□ 0.66
SF3A1Q15459 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.15■□□□□ 0.66
SF3A1Q15459 AC008667.4-201ENST00000607370 168 ntBASIC19.15■□□□□ 0.66
SF3A1Q15459 GGTLC5P-201ENST00000617623 998 ntBASIC19.15■□□□□ 0.66
SF3A1Q15459 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.15■□□□□ 0.66
SF3A1Q15459 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.15■□□□□ 0.66
SF3A1Q15459 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.15■□□□□ 0.66
SF3A1Q15459 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SF3A1Q15459 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.15■□□□□ 0.66
SF3A1Q15459 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SF3A1Q15459 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.15■□□□□ 0.66
SF3A1Q15459 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SF3A1Q15459 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC19.15■□□□□ 0.66
SF3A1Q15459 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
SF3A1Q15459 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SF3A1Q15459 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SF3A1Q15459 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.14■□□□□ 0.66
SF3A1Q15459 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
SF3A1Q15459 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.14■□□□□ 0.66
SF3A1Q15459 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.14■□□□□ 0.65
SF3A1Q15459 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
SF3A1Q15459 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.14■□□□□ 0.65
SF3A1Q15459 KRT18P67-201ENST00000432816 1264 ntBASIC19.14■□□□□ 0.65
SF3A1Q15459 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.14■□□□□ 0.65
SF3A1Q15459 IGHV3-65-201ENST00000523210 341 ntBASIC19.14■□□□□ 0.65
SF3A1Q15459 AC105339.3-201ENST00000560043 636 ntBASIC19.14■□□□□ 0.65
SF3A1Q15459 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 AL356488.2-201ENST00000602755 427 ntBASIC19.14■□□□□ 0.65
SF3A1Q15459 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.14■□□□□ 0.65
SF3A1Q15459 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.14■□□□□ 0.65
SF3A1Q15459 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SF3A1Q15459 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 KRT8P39-201ENST00000396270 1433 ntBASIC19.14■□□□□ 0.65
SF3A1Q15459 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 GGT3P-204ENST00000453783 1664 ntBASIC19.14■□□□□ 0.65
SF3A1Q15459 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.14■□□□□ 0.65
SF3A1Q15459 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SF3A1Q15459 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SF3A1Q15459 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.13■□□□□ 0.65
SF3A1Q15459 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
SF3A1Q15459 AL031731.1-201ENST00000642131 2094 ntBASIC19.13■□□□□ 0.65
SF3A1Q15459 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.13■□□□□ 0.65
SF3A1Q15459 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.13■□□□□ 0.65
SF3A1Q15459 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SF3A1Q15459 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SF3A1Q15459 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SF3A1Q15459 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms