Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.35■□□□□ 0.53
HPS3Q969F9 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
HPS3Q969F9 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.35■□□□□ 0.53
HPS3Q969F9 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.35■□□□□ 0.53
HPS3Q969F9 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC18.35■□□□□ 0.53
HPS3Q969F9 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.35■□□□□ 0.53
HPS3Q969F9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HPS3Q969F9 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HPS3Q969F9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.34■□□□□ 0.53
HPS3Q969F9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HPS3Q969F9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
HPS3Q969F9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 AL022342.1-201ENST00000400363 863 ntBASIC18.34■□□□□ 0.53
HPS3Q969F9 AC023274.1-201ENST00000418278 595 ntBASIC18.34■□□□□ 0.53
HPS3Q969F9 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 AL671883.3-201ENST00000603274 991 ntBASIC18.34■□□□□ 0.53
HPS3Q969F9 AC027601.4-201ENST00000611259 610 ntBASIC18.34■□□□□ 0.53
HPS3Q969F9 MED16-214ENST00000617672 554 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
HPS3Q969F9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.34■□□□□ 0.53
HPS3Q969F9 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HPS3Q969F9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
HPS3Q969F9 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HPS3Q969F9 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HPS3Q969F9 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
HPS3Q969F9 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HPS3Q969F9 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.33■□□□□ 0.53
HPS3Q969F9 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.33■□□□□ 0.53
HPS3Q969F9 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.33■□□□□ 0.53
HPS3Q969F9 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC18.33■□□□□ 0.53
HPS3Q969F9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HPS3Q969F9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.33■□□□□ 0.52
HPS3Q969F9 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
HPS3Q969F9 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.33■□□□□ 0.52
HPS3Q969F9 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.33■□□□□ 0.52
HPS3Q969F9 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.33■□□□□ 0.52
HPS3Q969F9 POLD2P1-201ENST00000511220 997 ntBASIC18.33■□□□□ 0.52
HPS3Q969F9 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
HPS3Q969F9 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
HPS3Q969F9 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.33■□□□□ 0.52
HPS3Q969F9 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.33■□□□□ 0.52
HPS3Q969F9 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HPS3Q969F9 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.33■□□□□ 0.52
HPS3Q969F9 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.33■□□□□ 0.52
HPS3Q969F9 AL009183.1-201ENST00000603760 355 ntBASIC18.33■□□□□ 0.52
HPS3Q969F9 AC007064.4-201ENST00000637740 555 ntBASIC18.33■□□□□ 0.52
HPS3Q969F9 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
HPS3Q969F9 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.33■□□□□ 0.52
HPS3Q969F9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HPS3Q969F9 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms