RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 DCAF8L2P0C7V8 631 aa30.53■■■□□ 2.48
SHANK1-201ENST00000293441 SUPT5HO00267 1087 aaKnown RBP28.63■■■□□ 2.17
SHANK1-201ENST00000293441 NISCHQ9Y2I1 1504 aa28.4■■■□□ 2.14
SHANK1-201ENST00000293441 SHROOM4Q9ULL8 1493 aa28.22■■■□□ 2.11
SHANK1-201ENST00000293441 EHMT2Q96KQ7 1210 aa28.05■■■□□ 2.08
SHANK1-201ENST00000293441 APLP2Q06481 763 aa27.35■■□□□ 1.97
SHANK1-201ENST00000293441 FAM9AQ8IZU1 332 aaPredicted RBP27.11■■□□□ 1.93
SHANK1-201ENST00000293441 TTBK1Q5TCY1 1321 aaPredicted RBP27.04■■□□□ 1.92
SHANK1-201ENST00000293441 PELP1Q8IZL8 1130 aaKnown RBP26.94■■□□□ 1.9
SHANK1-201ENST00000293441 RANGAP1P46060 587 aaPredicted RBP26.86■■□□□ 1.89
SHANK1-201ENST00000293441 ATP1B4Q9UN42 357 aaPredicted RBP26.67■■□□□ 1.86
SHANK1-201ENST00000293441 PCGF6Q9BYE7 350 aa26.53■■□□□ 1.84
SHANK1-201ENST00000293441 TRIM41Q8WV44 630 aa26.46■■□□□ 1.83
SHANK1-201ENST00000293441 UBTFP17480 764 aaKnown RBP26.3■■□□□ 1.8
SHANK1-201ENST00000293441 CCER1Q8TC90 406 aaPredicted RBP26.21■■□□□ 1.79
SHANK1-201ENST00000293441 ERICH6Q7L0X2 663 aa25.97■■□□□ 1.75
SHANK1-201ENST00000293441 ZEB1P37275 1124 aaPredicted RBP25.94■■□□□ 1.74
SHANK1-201ENST00000293441 CENPBP07199 599 aaPredicted RBP25.93■■□□□ 1.74
SHANK1-201ENST00000293441 PPARGC1BQ86YN6 1023 aaKnown RBP25.85■■□□□ 1.73
SHANK1-201ENST00000293441 MYT1LQ9UL68 1186 aa25.79■■□□□ 1.72
SHANK1-201ENST00000293441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.71■■□□□ 1.71
SHANK1-201ENST00000293441 HNRNPUL2Q1KMD3 747 aaKnown RBP25.71■■□□□ 1.71
SHANK1-201ENST00000293441 YTHDC1Q96MU7 727 aaKnown RBP25.67■■□□□ 1.7
SHANK1-201ENST00000293441 NEFLP07196 543 aa25.62■■□□□ 1.69
SHANK1-201ENST00000293441 ITGAEP38570 1179 aa25.58■■□□□ 1.69
SHANK1-201ENST00000293441 POLR3GLQ9BT43 218 aa25.48■■□□□ 1.67
SHANK1-201ENST00000293441 CHIC1Q5VXU3 224 aa25.39■■□□□ 1.65
SHANK1-201ENST00000293441 TRIM26Q12899 539 aaPredicted RBP25.27■■□□□ 1.64
SHANK1-201ENST00000293441 CNGB1Q14028 1251 aaPredicted RBP25.24■■□□□ 1.63
SHANK1-201ENST00000293441 LOC105371045A0A1W2PR82 267 aa25.18■■□□□ 1.62
SHANK1-201ENST00000293441 SLC4A1APQ9BWU0 796 aaKnown RBP25.13■■□□□ 1.61
SHANK1-201ENST00000293441 PABPN1Q86U42 306 aaKnown RBP eCLIP25.07■■□□□ 1.6
SHANK1-201ENST00000293441 ABCC9O60706 1549 aa25.03■■□□□ 1.6
SHANK1-201ENST00000293441 DAXXQ9UER7 740 aaPredicted RBP24.98■■□□□ 1.59
SHANK1-201ENST00000293441 FAM50AQ14320 339 aaKnown RBP24.89■■□□□ 1.58
SHANK1-201ENST00000293441 HRCP23327 699 aa24.87■■□□□ 1.57
SHANK1-201ENST00000293441 TRIM52Q96A61 297 aa24.78■■□□□ 1.56
SHANK1-201ENST00000293441 FBLN2P98095 1184 aa24.73■■□□□ 1.55
SHANK1-201ENST00000293441 NEUROD1Q13562 356 aa24.62■■□□□ 1.53
SHANK1-201ENST00000293441 CLSPNQ9HAW4 1339 aa24.56■■□□□ 1.52
SHANK1-201ENST00000293441 MYT1Q01538 1121 aa24.54■■□□□ 1.52
SHANK1-201ENST00000293441 ZNF326Q5BKZ1 582 aaKnown RBP24.52■■□□□ 1.52
SHANK1-201ENST00000293441 DIEXFQ68CQ4 756 aaKnown RBP24.43■■□□□ 1.5
SHANK1-201ENST00000293441 ARID3CA6NKF2 412 aa24.41■■□□□ 1.5
SHANK1-201ENST00000293441 ZNF316A6NFI3 1004 aaPredicted RBP24.4■■□□□ 1.5
SHANK1-201ENST00000293441 BCANQ96GW7 911 aa24.37■■□□□ 1.49
SHANK1-201ENST00000293441 P3H3Q8IVL6 736 aa24.35■■□□□ 1.49
SHANK1-201ENST00000293441 SLC24A1O60721 1099 aa24.32■■□□□ 1.48
SHANK1-201ENST00000293441 ZNF777Q9ULD5 760 aaPredicted RBP24.2■■□□□ 1.46
SHANK1-201ENST00000293441 ANP32CO43423 234 aa24.19■■□□□ 1.46
SHANK1-201ENST00000293441 ZBTB47Q9UFB7 747 aaPredicted RBP24.17■■□□□ 1.46
SHANK1-201ENST00000293441 BCL11AQ9H165 835 aa24.17■■□□□ 1.46
SHANK1-201ENST00000293441 RTL5Q5HYW3 569 aaPredicted RBP24.16■■□□□ 1.46
SHANK1-201ENST00000293441 CANXP27824 592 aaKnown RBP24.06■■□□□ 1.44
SHANK1-201ENST00000293441 PLPPR3Q6T4P5 718 aa24.04■■□□□ 1.44
SHANK1-201ENST00000293441 NEFMP07197 916 aa24.04■■□□□ 1.44
SHANK1-201ENST00000293441 ESF1Q9H501 851 aaKnown RBP24.02■■□□□ 1.44
SHANK1-201ENST00000293441 CSRNP3Q8WYN3 585 aa23.98■■□□□ 1.43
SHANK1-201ENST00000293441 SCRIBQ14160 1630 aa23.97■■□□□ 1.43
SHANK1-201ENST00000293441 CDK11AQ9UQ88 783 aaPredicted RBP23.95■■□□□ 1.42
SHANK1-201ENST00000293441 CHGAP10645 457 aaKnown RBP23.92■■□□□ 1.42
SHANK1-201ENST00000293441 STAG3Q9UJ98 1225 aa23.91■■□□□ 1.42
SHANK1-201ENST00000293441 NPM1P06748 294 aaKnown RBP eCLIP23.84■■□□□ 1.41
SHANK1-201ENST00000293441 GTF3C3Q9Y5Q9 886 aa23.78■■□□□ 1.4
SHANK1-201ENST00000293441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.68■■□□□ 1.38
SHANK1-201ENST00000293441 TONSLQ96HA7 1378 aa23.64■■□□□ 1.37
SHANK1-201ENST00000293441 CHIC2Q9UKJ5 165 aa23.62■■□□□ 1.37
SHANK1-201ENST00000293441 NPM2Q86SE8 214 aaKnown RBP23.53■■□□□ 1.36
SHANK1-201ENST00000293441 CHMP7Q8WUX9 453 aaPredicted RBP23.51■■□□□ 1.35
SHANK1-201ENST00000293441 SALL2Q9Y467 1007 aaPredicted RBP23.5■■□□□ 1.35
SHANK1-201ENST00000293441 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
SHANK1-201ENST00000293441 FAM9BQ8IZU0 186 aa23.46■■□□□ 1.35
SHANK1-201ENST00000293441 ANP32AP39687 249 aaKnown RBP23.46■■□□□ 1.35
SHANK1-201ENST00000293441 KDM2AQ9Y2K7 1162 aa23.45■■□□□ 1.34
SHANK1-201ENST00000293441 SENP3Q9H4L4 574 aaPredicted RBP23.43■■□□□ 1.34
SHANK1-201ENST00000293441 TSPY4P0CV99 314 aa23.43■■□□□ 1.34
SHANK1-201ENST00000293441 TSPY10P0CW01 314 aa23.43■■□□□ 1.34
SHANK1-201ENST00000293441 DDX10Q13206 875 aaKnown RBP23.41■■□□□ 1.34
SHANK1-201ENST00000293441 ZCCHC6Q5VYS8 1495 aaKnown RBP23.39■■□□□ 1.34
SHANK1-201ENST00000293441 HNRNPUQ00839 825 aaKnown RBP eCLIP23.39■■□□□ 1.33
SHANK1-201ENST00000293441 MTUS2Q5JR59 1369 aa23.37■■□□□ 1.33
SHANK1-201ENST00000293441 A0A0G2JS52 829 aa23.35■■□□□ 1.33
SHANK1-201ENST00000293441 HSP90AA1P07900 732 aaKnown RBP23.35■■□□□ 1.33
SHANK1-201ENST00000293441 PLEKHG5O94827 1062 aa23.35■■□□□ 1.33
SHANK1-201ENST00000293441 FKBP8Q14318 412 aa23.33■■□□□ 1.32
SHANK1-201ENST00000293441 KCNH8Q96L42 1107 aa23.33■■□□□ 1.32
SHANK1-201ENST00000293441 TMC1Q8TDI8 760 aa23.32■■□□□ 1.32
SHANK1-201ENST00000293441 ZBTB7CA1YPR0 619 aa23.31■■□□□ 1.32
SHANK1-201ENST00000293441 WDR43Q15061 677 aaKnown RBP eCLIP23.3■■□□□ 1.32
SHANK1-201ENST00000293441 ACIN1Q9UKV3 1341 aaKnown RBP23.3■■□□□ 1.32
SHANK1-201ENST00000293441 UPF2Q9HAU5 1272 aaKnown RBP23.25■■□□□ 1.31
SHANK1-201ENST00000293441 C14orf37Q86TY3 774 aa23.24■■□□□ 1.31
SHANK1-201ENST00000293441 PPP1R15AO75807 674 aaPredicted RBP23.22■■□□□ 1.31
SHANK1-201ENST00000293441 CCDC180Q9P1Z9 1646 aa23.21■■□□□ 1.31
SHANK1-201ENST00000293441 RRP7BPQ9NSQ0 103 aa23.21■■□□□ 1.31
SHANK1-201ENST00000293441 RB1CC1Q8TDY2 1594 aa23.2■■□□□ 1.31
SHANK1-201ENST00000293441 HIRIP3Q9BW71 556 aaPredicted RBP23.16■■□□□ 1.3
SHANK1-201ENST00000293441 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.16■■□□□ 1.3
SHANK1-201ENST00000293441 ANP32BQ92688 251 aaKnown RBP23.14■■□□□ 1.3
SHANK1-201ENST00000293441 ARID4BQ4LE39 1312 aaPredicted RBP23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms