Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 RPS15P9-201ENST00000494093 319 ntBASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 AC107918.2-201ENST00000530817 355 ntBASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 AC006557.2-201ENST00000592985 1240 ntBASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 AC107918.4-202ENST00000641623 219 ntBASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 AF228730.7-201ENST00000641842 219 ntBASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 TSPY26P-202ENST00000565928 3884 ntBASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CLHC1Q8NHS4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
CLHC1Q8NHS4 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 KRT8P39-201ENST00000396270 1433 ntBASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 UNC93B7-201ENST00000509439 705 ntBASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 CYP2A7P1-201ENST00000595391 815 ntBASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 MTHFR-217ENST00000641820 1569 ntBASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
CLHC1Q8NHS4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CLHC1Q8NHS4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms