RNA–Protein interactions for RNA: ENST00000537466.6

GPN3-202, Transcript of GPN-loop GTPase 3, humanhuman

TSL 1 (best) BASIC

Gene GPN3, Length 1,491 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-202ENST00000537466 NISCHQ9Y2I1 1504 aa42.34■■■■■ 4.37
GPN3-202ENST00000537466 CCDC180Q9P1Z9 1646 aa37.73■■■■□ 3.63
GPN3-202ENST00000537466 ABCC9O60706 1549 aa36.97■■■■□ 3.51
GPN3-202ENST00000537466 RB1CC1Q8TDY2 1594 aa35.51■■■■□ 3.28
GPN3-202ENST00000537466 NACADO15069 1562 aa35.44■■■■□ 3.26
GPN3-202ENST00000537466 DCAF8L2P0C7V8 631 aa35.37■■■■□ 3.25
GPN3-202ENST00000537466 ZCCHC6Q5VYS8 1495 aaKnown RBP35.26■■■■□ 3.24
GPN3-202ENST00000537466 MYO15BQ96JP2 1530 aa35.17■■■■□ 3.22
GPN3-202ENST00000537466 DCAF1Q9Y4B6 1507 aa35■■■■□ 3.19
GPN3-202ENST00000537466 UNC13AQ9UPW8 1703 aa34.88■■■■□ 3.17
GPN3-202ENST00000537466 PABPN1Q86U42 306 aaKnown RBP eCLIP34.51■■■■□ 3.11
GPN3-202ENST00000537466 BICRAQ9NZM4 1560 aa34.5■■■■□ 3.11
GPN3-202ENST00000537466 SCRIBQ14160 1630 aa34.43■■■■□ 3.1
GPN3-202ENST00000537466 DNAJC5BQ9UF47 199 aa34.01■■■■□ 3.04
GPN3-202ENST00000537466 SHROOM4Q9ULL8 1493 aa34.01■■■■□ 3.03
GPN3-202ENST00000537466 EIF4G1Q04637 1599 aaKnown RBP33.57■■■□□ 2.96
GPN3-202ENST00000537466 CC2D2AQ9P2K1 1620 aa33.47■■■□□ 2.95
GPN3-202ENST00000537466 CECR2Q9BXF3 1484 aa33.2■■■□□ 2.91
GPN3-202ENST00000537466 SMARCA4P51532 1647 aa32.91■■■□□ 2.86
GPN3-202ENST00000537466 BAZ1AQ9NRL2 1556 aaPredicted RBP32.82■■■□□ 2.84
GPN3-202ENST00000537466 ATAD2BQ9ULI0 1458 aa32.7■■■□□ 2.83
GPN3-202ENST00000537466 NCAPD3P42695 1498 aa32.68■■■□□ 2.82
GPN3-202ENST00000537466 MROH2BQ7Z745 1585 aa32.66■■■□□ 2.82
GPN3-202ENST00000537466 SMARCA2P51531 1590 aa32.66■■■□□ 2.82
GPN3-202ENST00000537466 PEG3Q9GZU2 1588 aa32.57■■■□□ 2.8
GPN3-202ENST00000537466 HMGXB3Q12766 1538 aa32.54■■■□□ 2.8
GPN3-202ENST00000537466 BAZ1BQ9UIG0 1483 aaKnown RBP32.43■■■□□ 2.78
GPN3-202ENST00000537466 WIZO95785 1651 aa32.36■■■□□ 2.77
GPN3-202ENST00000537466 RSF1Q96T23 1441 aaPredicted RBP32.21■■■□□ 2.75
GPN3-202ENST00000537466 NESP48681 1621 aa32■■■□□ 2.71
GPN3-202ENST00000537466 TOP2AP11388 1531 aaKnown RBP31.94■■■□□ 2.7
GPN3-202ENST00000537466 LAMC3Q9Y6N6 1575 aa31.87■■■□□ 2.69
GPN3-202ENST00000537466 ERCC6Q03468 1493 aa31.83■■■□□ 2.69
GPN3-202ENST00000537466 CADPSQ9ULU8 1353 aa31.71■■■□□ 2.67
GPN3-202ENST00000537466 KIF21AQ7Z4S6 1674 aa31.68■■■□□ 2.66
GPN3-202ENST00000537466 PDS5BQ9NTI5 1447 aa31.59■■■□□ 2.65
GPN3-202ENST00000537466 CCDC88BA6NC98 1476 aa31.56■■■□□ 2.64
GPN3-202ENST00000537466 THOC2Q8NI27 1593 aaKnown RBP31.55■■■□□ 2.64
GPN3-202ENST00000537466 CFTRP13569 1480 aa31.52■■■□□ 2.64
GPN3-202ENST00000537466 CUX2O14529 1486 aa31.52■■■□□ 2.64
GPN3-202ENST00000537466 PRDM2Q13029 1718 aa31.43■■■□□ 2.62
GPN3-202ENST00000537466 FANCD2Q9BXW9 1451 aa31.38■■■□□ 2.61
GPN3-202ENST00000537466 CEP164Q9UPV0 1460 aa31.35■■■□□ 2.61
GPN3-202ENST00000537466 SUPT5HO00267 1087 aaKnown RBP31.32■■■□□ 2.6
GPN3-202ENST00000537466 MRC2Q9UBG0 1479 aa31.32■■■□□ 2.6
GPN3-202ENST00000537466 WDR62O43379 1518 aa31.24■■■□□ 2.59
GPN3-202ENST00000537466 URB2Q14146 1524 aaKnown RBP31.11■■■□□ 2.57
GPN3-202ENST00000537466 TOPBP1Q92547 1522 aa30.89■■■□□ 2.54
GPN3-202ENST00000537466 DNMBPQ6XZF7 1577 aa30.85■■■□□ 2.53
GPN3-202ENST00000537466 ABCC8Q09428 1581 aa30.82■■■□□ 2.52
GPN3-202ENST00000537466 IFT140Q96RY7 1462 aa30.67■■■□□ 2.5
GPN3-202ENST00000537466 CUX1P39880 1505 aa30.64■■■□□ 2.5
GPN3-202ENST00000537466 DNAJC5Q9H3Z4 198 aa30.63■■■□□ 2.49
GPN3-202ENST00000537466 POLA1P09884 1462 aaPredicted RBP30.61■■■□□ 2.49
GPN3-202ENST00000537466 ZNF608Q9ULD9 1512 aaPredicted RBP30.6■■■□□ 2.49
GPN3-202ENST00000537466 TARBP1Q13395 1621 aaKnown RBP30.59■■■□□ 2.49
GPN3-202ENST00000537466 FGD5Q6ZNL6 1462 aa30.54■■■□□ 2.48
GPN3-202ENST00000537466 EIF4G3O43432 1585 aaKnown RBP30.51■■■□□ 2.47
GPN3-202ENST00000537466 RAD54L2Q9Y4B4 1467 aa30.5■■■□□ 2.47
GPN3-202ENST00000537466 SOGA1O94964 1423 aa30.46■■■□□ 2.47
GPN3-202ENST00000537466 AQRO60306 1485 aaKnown RBP eCLIP30.4■■■□□ 2.46
GPN3-202ENST00000537466 BIVM-ERCC5R4GMW8 1640 aa30.38■■■□□ 2.45
GPN3-202ENST00000537466 SYNJ1O43426 1573 aa30.38■■■□□ 2.45
GPN3-202ENST00000537466 WDR97A6NE52 1622 aa30.37■■■□□ 2.45
GPN3-202ENST00000537466 WRNQ14191 1432 aaPredicted RBP eCLIP30.36■■■□□ 2.45
GPN3-202ENST00000537466 TOP2BQ02880 1626 aa30.36■■■□□ 2.45
GPN3-202ENST00000537466 TDRD9Q8NDG6 1382 aaKnown RBP30.31■■■□□ 2.44
GPN3-202ENST00000537466 ABCA10Q8WWZ4 1543 aa30.22■■■□□ 2.43
GPN3-202ENST00000537466 CHD1O14646 1710 aa30.19■■■□□ 2.42
GPN3-202ENST00000537466 PBRM1Q86U86 1689 aa30.18■■■□□ 2.42
GPN3-202ENST00000537466 OSCARQ8IYS5 282 aa30.17■■■□□ 2.42
GPN3-202ENST00000537466 ABCA5Q8WWZ7 1642 aa30.16■■■□□ 2.42
GPN3-202ENST00000537466 GAPVD1Q14C86 1478 aa30.12■■■□□ 2.41
GPN3-202ENST00000537466 SNAPC4Q5SXM2 1469 aa30.12■■■□□ 2.41
GPN3-202ENST00000537466 GRIN2BQ13224 1484 aa30.1■■■□□ 2.41
GPN3-202ENST00000537466 MAGI1Q96QZ7 1491 aaPredicted RBP30.04■■■□□ 2.4
GPN3-202ENST00000537466 FBLN2P98095 1184 aa30■■■□□ 2.39
GPN3-202ENST00000537466 SYNJ2O15056 1496 aa29.93■■■□□ 2.38
GPN3-202ENST00000537466 CHMP7Q8WUX9 453 aaPredicted RBP29.88■■■□□ 2.37
GPN3-202ENST00000537466 ADAMTS12P58397 1594 aa29.87■■■□□ 2.37
GPN3-202ENST00000537466 ERICH3Q5RHP9 1530 aa29.85■■■□□ 2.37
GPN3-202ENST00000537466 RIMBP3CA6NJZ7 1639 aa29.81■■■□□ 2.36
GPN3-202ENST00000537466 RIMBP3BA6NNM3 1639 aa29.81■■■□□ 2.36
GPN3-202ENST00000537466 RIMBP3Q9UFD9 1639 aa29.81■■■□□ 2.36
GPN3-202ENST00000537466 CLASP1Q7Z460 1538 aa29.79■■■□□ 2.36
GPN3-202ENST00000537466 ARHGEF11O15085 1522 aa29.75■■■□□ 2.35
GPN3-202ENST00000537466 GRIN2AQ12879 1464 aa29.75■■■□□ 2.35
GPN3-202ENST00000537466 FHAD1B1AJZ9 1412 aa29.74■■■□□ 2.35
GPN3-202ENST00000537466 KIF27Q86VH2 1401 aa29.71■■■□□ 2.35
GPN3-202ENST00000537466 CEP170Q5SW79 1584 aa29.66■■■□□ 2.34
GPN3-202ENST00000537466 TRIM41Q8WV44 630 aa29.62■■■□□ 2.33
GPN3-202ENST00000537466 IGF1RP08069 1367 aa29.62■■■□□ 2.33
GPN3-202ENST00000537466 NUP160Q12769 1436 aa29.61■■■□□ 2.33
GPN3-202ENST00000537466 CUL7Q14999 1698 aa29.6■■■□□ 2.33
GPN3-202ENST00000537466 RUSC2Q8N2Y8 1516 aa29.52■■■□□ 2.32
GPN3-202ENST00000537466 ARAP1Q96P48 1450 aa29.51■■■□□ 2.32
GPN3-202ENST00000537466 SHROOM2Q13796 1616 aa29.46■■■□□ 2.31
GPN3-202ENST00000537466 CYB5RLQ6IPT4 315 aa29.43■■■□□ 2.3
GPN3-202ENST00000537466 CARMIL1Q5VZK9 1371 aa29.43■■■□□ 2.3
GPN3-202ENST00000537466 ERCC6L2Q5T890 1561 aa29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms