Protein–RNA interactions for Protein: P52655

GTF2A1, Transcription initiation factor IIA subunit 1, humanhuman

Predicted RBP Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1P52655 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
GTF2A1P52655 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
GTF2A1P52655 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
GTF2A1P52655 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 HLA-A-202ENST00000376806 1854 ntBASIC16.31■□□□□ 0.2
GTF2A1P52655 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
GTF2A1P52655 AL731571.1-201ENST00000617058 5428 ntBASIC16.31■□□□□ 0.2
GTF2A1P52655 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
GTF2A1P52655 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.31■□□□□ 0.2
GTF2A1P52655 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.31■□□□□ 0.2
GTF2A1P52655 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.31■□□□□ 0.2
GTF2A1P52655 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
GTF2A1P52655 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC16.31■□□□□ 0.2
GTF2A1P52655 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
GTF2A1P52655 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
GTF2A1P52655 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
GTF2A1P52655 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
GTF2A1P52655 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.3■□□□□ 0.2
GTF2A1P52655 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
GTF2A1P52655 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
GTF2A1P52655 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
GTF2A1P52655 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
GTF2A1P52655 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.3■□□□□ 0.2
GTF2A1P52655 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.3■□□□□ 0.2
GTF2A1P52655 AC004980.1-204ENST00000429707 299 ntBASIC16.3■□□□□ 0.2
GTF2A1P52655 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 AC233263.1-201ENST00000578059 224 ntBASIC16.3■□□□□ 0.2
GTF2A1P52655 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.3■□□□□ 0.2
GTF2A1P52655 AL445675.2-201ENST00000620291 557 ntBASIC16.3■□□□□ 0.2
GTF2A1P52655 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.3■□□□□ 0.2
GTF2A1P52655 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 SSR4P1-203ENST00000599569 2260 ntBASIC16.3■□□□□ 0.2
GTF2A1P52655 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
GTF2A1P52655 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
GTF2A1P52655 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms