RNA–Protein interactions for RNA: ENST00000413852.5

SEMA3F-202, Transcript of semaphorin 3F, humanhuman

TSL 1 (best) BASIC

Gene SEMA3F, Length 3,212 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3F-202ENST00000413852 NISCHQ9Y2I1 1504 aa28.66■■■□□ 2.18
SEMA3F-202ENST00000413852 SHROOM4Q9ULL8 1493 aa25.61■■□□□ 1.69
SEMA3F-202ENST00000413852 SUPT5HO00267 1087 aaKnown RBP25.28■■□□□ 1.64
SEMA3F-202ENST00000413852 MYO15BQ96JP2 1530 aa24.6■■□□□ 1.53
SEMA3F-202ENST00000413852 DCAF8L2P0C7V8 631 aa24.55■■□□□ 1.52
SEMA3F-202ENST00000413852 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
SEMA3F-202ENST00000413852 PCGF6Q9BYE7 350 aa24.45■■□□□ 1.5
SEMA3F-202ENST00000413852 HRCP23327 699 aa24.44■■□□□ 1.5
SEMA3F-202ENST00000413852 PPARGC1BQ86YN6 1023 aaKnown RBP24.39■■□□□ 1.49
SEMA3F-202ENST00000413852 ZCCHC6Q5VYS8 1495 aaKnown RBP24.26■■□□□ 1.47
SEMA3F-202ENST00000413852 LOC105371045A0A1W2PR82 267 aa24.13■■□□□ 1.45
SEMA3F-202ENST00000413852 CCDC180Q9P1Z9 1646 aa23.74■■□□□ 1.39
SEMA3F-202ENST00000413852 EHMT2Q96KQ7 1210 aa23.62■■□□□ 1.37
SEMA3F-202ENST00000413852 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
SEMA3F-202ENST00000413852 FAM9AQ8IZU1 332 aaPredicted RBP23.49■■□□□ 1.35
SEMA3F-202ENST00000413852 TRIM26Q12899 539 aaPredicted RBP23.48■■□□□ 1.35
SEMA3F-202ENST00000413852 TRIM41Q8WV44 630 aa23.22■■□□□ 1.31
SEMA3F-202ENST00000413852 RSF1Q96T23 1441 aaPredicted RBP23.03■■□□□ 1.28
SEMA3F-202ENST00000413852 SCAF1Q9H7N4 1312 aaKnown RBP23.03■■□□□ 1.28
SEMA3F-202ENST00000413852 SCRIBQ14160 1630 aa22.99■■□□□ 1.27
SEMA3F-202ENST00000413852 ABCC9O60706 1549 aa22.96■■□□□ 1.27
SEMA3F-202ENST00000413852 RB1CC1Q8TDY2 1594 aa22.92■■□□□ 1.26
SEMA3F-202ENST00000413852 ZEB1P37275 1124 aaPredicted RBP22.91■■□□□ 1.26
SEMA3F-202ENST00000413852 TTBK1Q5TCY1 1321 aaPredicted RBP22.89■■□□□ 1.25
SEMA3F-202ENST00000413852 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.86■■□□□ 1.25
SEMA3F-202ENST00000413852 CECR2Q9BXF3 1484 aa22.68■■□□□ 1.22
SEMA3F-202ENST00000413852 CCER1Q8TC90 406 aaPredicted RBP22.66■■□□□ 1.22
SEMA3F-202ENST00000413852 NEUROD1Q13562 356 aa22.59■■□□□ 1.21
SEMA3F-202ENST00000413852 MROH2BQ7Z745 1585 aa22.52■■□□□ 1.2
SEMA3F-202ENST00000413852 ACIN1Q9UKV3 1341 aaKnown RBP22.46■■□□□ 1.19
SEMA3F-202ENST00000413852 PELP1Q8IZL8 1130 aaKnown RBP22.46■■□□□ 1.19
SEMA3F-202ENST00000413852 WIZO95785 1651 aa22.43■■□□□ 1.18
SEMA3F-202ENST00000413852 DIEXFQ68CQ4 756 aaKnown RBP22.4■■□□□ 1.18
SEMA3F-202ENST00000413852 GTF3C3Q9Y5Q9 886 aa22.4■■□□□ 1.18
SEMA3F-202ENST00000413852 YTHDC1Q96MU7 727 aaKnown RBP22.28■■□□□ 1.16
SEMA3F-202ENST00000413852 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
SEMA3F-202ENST00000413852 CCDC88BA6NC98 1476 aa22.21■■□□□ 1.15
SEMA3F-202ENST00000413852 SOGA1O94964 1423 aa22.16■■□□□ 1.14
SEMA3F-202ENST00000413852 UBTFP17480 764 aaKnown RBP22.16■■□□□ 1.14
SEMA3F-202ENST00000413852 CENPBP07199 599 aaPredicted RBP22.12■■□□□ 1.13
SEMA3F-202ENST00000413852 CEP162Q5TB80 1403 aa22.11■■□□□ 1.13
SEMA3F-202ENST00000413852 RUSC2Q8N2Y8 1516 aa22.1■■□□□ 1.13
SEMA3F-202ENST00000413852 HNRNPUL2Q1KMD3 747 aaKnown RBP22.09■■□□□ 1.13
SEMA3F-202ENST00000413852 RANGAP1P46060 587 aaPredicted RBP22.07■■□□□ 1.12
SEMA3F-202ENST00000413852 EIF4G1Q04637 1599 aaKnown RBP22.02■■□□□ 1.12
SEMA3F-202ENST00000413852 BAZ1AQ9NRL2 1556 aaPredicted RBP22.01■■□□□ 1.11
SEMA3F-202ENST00000413852 ZNF316A6NFI3 1004 aaPredicted RBP22.01■■□□□ 1.11
SEMA3F-202ENST00000413852 NACADO15069 1562 aa21.99■■□□□ 1.11
SEMA3F-202ENST00000413852 MIER1Q8N108 512 aa21.99■■□□□ 1.11
SEMA3F-202ENST00000413852 CSRNP3Q8WYN3 585 aa21.96■■□□□ 1.11
SEMA3F-202ENST00000413852 WRNQ14191 1432 aaPredicted RBP eCLIP21.91■■□□□ 1.1
SEMA3F-202ENST00000413852 TNIKQ9UKE5 1360 aa21.87■■□□□ 1.09
SEMA3F-202ENST00000413852 PABPN1Q86U42 306 aaKnown RBP eCLIP21.84■■□□□ 1.09
SEMA3F-202ENST00000413852 SMARCA2P51531 1590 aa21.81■■□□□ 1.08
SEMA3F-202ENST00000413852 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
SEMA3F-202ENST00000413852 SMARCA4P51532 1647 aa21.71■■□□□ 1.07
SEMA3F-202ENST00000413852 GOLGA3Q08378 1498 aa21.66■■□□□ 1.06
SEMA3F-202ENST00000413852 CLIP1P30622 1438 aa21.59■■□□□ 1.05
SEMA3F-202ENST00000413852 APLP2Q06481 763 aa21.58■■□□□ 1.04
SEMA3F-202ENST00000413852 EEA1Q15075 1411 aa21.53■■□□□ 1.04
SEMA3F-202ENST00000413852 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
SEMA3F-202ENST00000413852 RAPGEF2Q9Y4G8 1499 aa21.5■■□□□ 1.03
SEMA3F-202ENST00000413852 ITGAEP38570 1179 aa21.46■■□□□ 1.03
SEMA3F-202ENST00000413852 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.02
SEMA3F-202ENST00000413852 UNC13AQ9UPW8 1703 aa21.45■■□□□ 1.02
SEMA3F-202ENST00000413852 KANK4Q5T7N3 995 aaPredicted RBP21.44■■□□□ 1.02
SEMA3F-202ENST00000413852 VPS8Q8N3P4 1428 aa21.43■■□□□ 1.02
SEMA3F-202ENST00000413852 KCNH8Q96L42 1107 aa21.39■■□□□ 1.02
SEMA3F-202ENST00000413852 SUPT16HQ9Y5B9 1047 aaKnown RBP21.35■■□□□ 1.01
SEMA3F-202ENST00000413852 KIF21BO75037 1637 aa21.33■■□□□ 1.01
SEMA3F-202ENST00000413852 DHX57Q6P158 1386 aaKnown RBP21.33■■□□□ 1.01
SEMA3F-202ENST00000413852 BCANQ96GW7 911 aa21.27■□□□□ 0.99
SEMA3F-202ENST00000413852 MYT1Q01538 1121 aa21.26■□□□□ 0.99
SEMA3F-202ENST00000413852 BICRAQ9NZM4 1560 aa21.21■□□□□ 0.99
SEMA3F-202ENST00000413852 HIRIP3Q9BW71 556 aaPredicted RBP21.16■□□□□ 0.98
SEMA3F-202ENST00000413852 ARAP1Q96P48 1450 aa21.15■□□□□ 0.98
SEMA3F-202ENST00000413852 TSHZ2Q9NRE2 1034 aa21.15■□□□□ 0.98
SEMA3F-202ENST00000413852 ATAD2BQ9ULI0 1458 aa21.14■□□□□ 0.98
SEMA3F-202ENST00000413852 BAZ1BQ9UIG0 1483 aaKnown RBP21.13■□□□□ 0.97
SEMA3F-202ENST00000413852 SIN3AQ96ST3 1273 aa21.07■□□□□ 0.96
SEMA3F-202ENST00000413852 DDX10Q13206 875 aaKnown RBP21.06■□□□□ 0.96
SEMA3F-202ENST00000413852 PEG3Q9GZU2 1588 aa21■□□□□ 0.95
SEMA3F-202ENST00000413852 ATP1B4Q9UN42 357 aaPredicted RBP21■□□□□ 0.95
SEMA3F-202ENST00000413852 CLSPNQ9HAW4 1339 aa21■□□□□ 0.95
SEMA3F-202ENST00000413852 CCNB3Q8WWL7 1395 aa20.99■□□□□ 0.95
SEMA3F-202ENST00000413852 FKBP8Q14318 412 aa20.99■□□□□ 0.95
SEMA3F-202ENST00000413852 P3H3Q8IVL6 736 aa20.99■□□□□ 0.95
SEMA3F-202ENST00000413852 PRXQ9BXM0 1461 aa20.98■□□□□ 0.95
SEMA3F-202ENST00000413852 TOP2BQ02880 1626 aa20.97■□□□□ 0.95
SEMA3F-202ENST00000413852 RAB3GAP2Q9H2M9 1393 aa20.97■□□□□ 0.95
SEMA3F-202ENST00000413852 FAM50AQ14320 339 aaKnown RBP20.95■□□□□ 0.94
SEMA3F-202ENST00000413852 TRIM52Q96A61 297 aa20.94■□□□□ 0.94
SEMA3F-202ENST00000413852 RRBP1Q9P2E9 1410 aaKnown RBP20.93■□□□□ 0.94
SEMA3F-202ENST00000413852 ARHGAP35Q9NRY4 1499 aa20.9■□□□□ 0.94
SEMA3F-202ENST00000413852 CUX1P39880 1505 aa20.87■□□□□ 0.93
SEMA3F-202ENST00000413852 MAPKBP1O60336 1514 aa20.85■□□□□ 0.93
SEMA3F-202ENST00000413852 ANP32EQ9BTT0 268 aa20.83■□□□□ 0.93
SEMA3F-202ENST00000413852 ERICH3Q5RHP9 1530 aa20.83■□□□□ 0.92
SEMA3F-202ENST00000413852 WDR97A6NE52 1622 aa20.83■□□□□ 0.92
SEMA3F-202ENST00000413852 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 497.7 ms