RNA–Protein interactions for RNA: ENST00000564060.5

CMTM3-207, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2 BASIC

Gene CMTM3, Length 824 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-207ENST00000564060 NISCHQ9Y2I1 1504 aa48.58■■■■■ 5.37
CMTM3-207ENST00000564060 CCDC180Q9P1Z9 1646 aa43.44■■■■■ 4.55
CMTM3-207ENST00000564060 ABCC9O60706 1549 aa42.51■■■■■ 4.39
CMTM3-207ENST00000564060 RB1CC1Q8TDY2 1594 aa40.94■■■■■ 4.14
CMTM3-207ENST00000564060 NACADO15069 1562 aa40.83■■■■■ 4.13
CMTM3-207ENST00000564060 DCAF8L2P0C7V8 631 aa40.57■■■■■ 4.09
CMTM3-207ENST00000564060 MYO15BQ96JP2 1530 aa40.52■■■■■ 4.08
CMTM3-207ENST00000564060 ZCCHC6Q5VYS8 1495 aaKnown RBP40.45■■■■■ 4.07
CMTM3-207ENST00000564060 DCAF1Q9Y4B6 1507 aa40.26■■■■■ 4.03
CMTM3-207ENST00000564060 UNC13AQ9UPW8 1703 aa40.04■■■■■ 4
CMTM3-207ENST00000564060 BICRAQ9NZM4 1560 aa39.6■■■■□ 3.93
CMTM3-207ENST00000564060 PABPN1Q86U42 306 aaKnown RBP eCLIP39.6■■■■□ 3.93
CMTM3-207ENST00000564060 SCRIBQ14160 1630 aa39.5■■■■□ 3.91
CMTM3-207ENST00000564060 SHROOM4Q9ULL8 1493 aa39.31■■■■□ 3.88
CMTM3-207ENST00000564060 DNAJC5BQ9UF47 199 aa39.05■■■■□ 3.84
CMTM3-207ENST00000564060 EIF4G1Q04637 1599 aaKnown RBP38.62■■■■□ 3.77
CMTM3-207ENST00000564060 CC2D2AQ9P2K1 1620 aa38.51■■■■□ 3.76
CMTM3-207ENST00000564060 CECR2Q9BXF3 1484 aa38.25■■■■□ 3.71
CMTM3-207ENST00000564060 SMARCA4P51532 1647 aa37.79■■■■□ 3.64
CMTM3-207ENST00000564060 BAZ1AQ9NRL2 1556 aaPredicted RBP37.73■■■■□ 3.63
CMTM3-207ENST00000564060 SMARCA2P51531 1590 aa37.62■■■■□ 3.61
CMTM3-207ENST00000564060 NCAPD3P42695 1498 aa37.6■■■■□ 3.61
CMTM3-207ENST00000564060 ATAD2BQ9ULI0 1458 aa37.58■■■■□ 3.61
CMTM3-207ENST00000564060 HMGXB3Q12766 1538 aa37.47■■■■□ 3.59
CMTM3-207ENST00000564060 PEG3Q9GZU2 1588 aa37.44■■■■□ 3.58
CMTM3-207ENST00000564060 MROH2BQ7Z745 1585 aa37.39■■■■□ 3.58
CMTM3-207ENST00000564060 BAZ1BQ9UIG0 1483 aaKnown RBP37.3■■■■□ 3.56
CMTM3-207ENST00000564060 WIZO95785 1651 aa37.03■■■■□ 3.52
CMTM3-207ENST00000564060 RSF1Q96T23 1441 aaPredicted RBP36.87■■■■□ 3.49
CMTM3-207ENST00000564060 LAMC3Q9Y6N6 1575 aa36.74■■■■□ 3.47
CMTM3-207ENST00000564060 ERCC6Q03468 1493 aa36.73■■■■□ 3.47
CMTM3-207ENST00000564060 NESP48681 1621 aa36.7■■■■□ 3.47
CMTM3-207ENST00000564060 TOP2AP11388 1531 aaKnown RBP36.66■■■■□ 3.46
CMTM3-207ENST00000564060 CADPSQ9ULU8 1353 aa36.47■■■■□ 3.43
CMTM3-207ENST00000564060 CUX2O14529 1486 aa36.44■■■■□ 3.42
CMTM3-207ENST00000564060 PDS5BQ9NTI5 1447 aa36.43■■■■□ 3.42
CMTM3-207ENST00000564060 KIF21AQ7Z4S6 1674 aa36.41■■■■□ 3.42
CMTM3-207ENST00000564060 THOC2Q8NI27 1593 aaKnown RBP36.31■■■■□ 3.4
CMTM3-207ENST00000564060 CFTRP13569 1480 aa36.24■■■■□ 3.39
CMTM3-207ENST00000564060 PRDM2Q13029 1718 aa36.16■■■■□ 3.38
CMTM3-207ENST00000564060 CCDC88BA6NC98 1476 aa36.15■■■■□ 3.38
CMTM3-207ENST00000564060 CEP164Q9UPV0 1460 aa36.1■■■■□ 3.37
CMTM3-207ENST00000564060 FANCD2Q9BXW9 1451 aa36.08■■■■□ 3.37
CMTM3-207ENST00000564060 MRC2Q9UBG0 1479 aa36.07■■■■□ 3.37
CMTM3-207ENST00000564060 WDR62O43379 1518 aa35.98■■■■□ 3.35
CMTM3-207ENST00000564060 SUPT5HO00267 1087 aaKnown RBP35.73■■■■□ 3.31
CMTM3-207ENST00000564060 URB2Q14146 1524 aaKnown RBP35.7■■■■□ 3.31
CMTM3-207ENST00000564060 ABCC8Q09428 1581 aa35.55■■■■□ 3.28
CMTM3-207ENST00000564060 TOPBP1Q92547 1522 aa35.48■■■■□ 3.27
CMTM3-207ENST00000564060 DNMBPQ6XZF7 1577 aa35.47■■■■□ 3.27
CMTM3-207ENST00000564060 DNAJC5Q9H3Z4 198 aa35.44■■■■□ 3.26
CMTM3-207ENST00000564060 IFT140Q96RY7 1462 aa35.34■■■■□ 3.25
CMTM3-207ENST00000564060 POLA1P09884 1462 aaPredicted RBP35.16■■■■□ 3.22
CMTM3-207ENST00000564060 TARBP1Q13395 1621 aaKnown RBP35.14■■■■□ 3.22
CMTM3-207ENST00000564060 CUX1P39880 1505 aa35.11■■■■□ 3.21
CMTM3-207ENST00000564060 ZNF608Q9ULD9 1512 aaPredicted RBP35.1■■■■□ 3.21
CMTM3-207ENST00000564060 EIF4G3O43432 1585 aaKnown RBP35.08■■■■□ 3.21
CMTM3-207ENST00000564060 FGD5Q6ZNL6 1462 aa35.04■■■■□ 3.2
CMTM3-207ENST00000564060 SOGA1O94964 1423 aa34.99■■■■□ 3.19
CMTM3-207ENST00000564060 WDR97A6NE52 1622 aa34.97■■■■□ 3.19
CMTM3-207ENST00000564060 RAD54L2Q9Y4B4 1467 aa34.95■■■■□ 3.19
CMTM3-207ENST00000564060 AQRO60306 1485 aaKnown RBP eCLIP34.87■■■■□ 3.17
CMTM3-207ENST00000564060 BIVM-ERCC5R4GMW8 1640 aa34.86■■■■□ 3.17
CMTM3-207ENST00000564060 WRNQ14191 1432 aaPredicted RBP eCLIP34.83■■■■□ 3.17
CMTM3-207ENST00000564060 TOP2BQ02880 1626 aa34.83■■■■□ 3.17
CMTM3-207ENST00000564060 OSCARQ8IYS5 282 aa34.81■■■■□ 3.16
CMTM3-207ENST00000564060 TDRD9Q8NDG6 1382 aaKnown RBP34.76■■■■□ 3.16
CMTM3-207ENST00000564060 SYNJ1O43426 1573 aa34.75■■■■□ 3.15
CMTM3-207ENST00000564060 ABCA10Q8WWZ4 1543 aa34.72■■■■□ 3.15
CMTM3-207ENST00000564060 CHD1O14646 1710 aa34.71■■■■□ 3.15
CMTM3-207ENST00000564060 PBRM1Q86U86 1689 aa34.67■■■■□ 3.14
CMTM3-207ENST00000564060 GRIN2BQ13224 1484 aa34.65■■■■□ 3.14
CMTM3-207ENST00000564060 ABCA5Q8WWZ7 1642 aa34.63■■■■□ 3.13
CMTM3-207ENST00000564060 GAPVD1Q14C86 1478 aa34.62■■■■□ 3.13
CMTM3-207ENST00000564060 MAGI1Q96QZ7 1491 aaPredicted RBP34.62■■■■□ 3.13
CMTM3-207ENST00000564060 SNAPC4Q5SXM2 1469 aa34.61■■■■□ 3.13
CMTM3-207ENST00000564060 FBLN2P98095 1184 aa34.5■■■■□ 3.11
CMTM3-207ENST00000564060 SYNJ2O15056 1496 aa34.46■■■■□ 3.11
CMTM3-207ENST00000564060 CHMP7Q8WUX9 453 aaPredicted RBP34.41■■■■□ 3.1
CMTM3-207ENST00000564060 RIMBP3CA6NJZ7 1639 aa34.34■■■■□ 3.09
CMTM3-207ENST00000564060 RIMBP3BA6NNM3 1639 aa34.34■■■■□ 3.09
CMTM3-207ENST00000564060 RIMBP3Q9UFD9 1639 aa34.34■■■■□ 3.09
CMTM3-207ENST00000564060 ERICH3Q5RHP9 1530 aa34.34■■■■□ 3.09
CMTM3-207ENST00000564060 ADAMTS12P58397 1594 aa34.32■■■■□ 3.08
CMTM3-207ENST00000564060 ARHGEF11O15085 1522 aa34.29■■■■□ 3.08
CMTM3-207ENST00000564060 CLASP1Q7Z460 1538 aa34.26■■■■□ 3.08
CMTM3-207ENST00000564060 FHAD1B1AJZ9 1412 aa34.21■■■■□ 3.07
CMTM3-207ENST00000564060 GRIN2AQ12879 1464 aa34.2■■■■□ 3.07
CMTM3-207ENST00000564060 TRIM41Q8WV44 630 aa34.18■■■■□ 3.06
CMTM3-207ENST00000564060 KIF27Q86VH2 1401 aa34.14■■■■□ 3.06
CMTM3-207ENST00000564060 CUL7Q14999 1698 aa34.05■■■■□ 3.04
CMTM3-207ENST00000564060 NUP160Q12769 1436 aa34.04■■■■□ 3.04
CMTM3-207ENST00000564060 CEP170Q5SW79 1584 aa34.03■■■■□ 3.04
CMTM3-207ENST00000564060 ARAP1Q96P48 1450 aa33.96■■■■□ 3.03
CMTM3-207ENST00000564060 IGF1RP08069 1367 aa33.93■■■■□ 3.02
CMTM3-207ENST00000564060 CYB5RLQ6IPT4 315 aa33.9■■■■□ 3.02
CMTM3-207ENST00000564060 SHROOM2Q13796 1616 aa33.87■■■■□ 3.01
CMTM3-207ENST00000564060 RUSC2Q8N2Y8 1516 aa33.82■■■■□ 3
CMTM3-207ENST00000564060 CARMIL1Q5VZK9 1371 aa33.78■■■■□ 3
CMTM3-207ENST00000564060 ERCC6L2Q5T890 1561 aa33.69■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms