Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
BDNFP23560 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
BDNFP23560 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.43■□□□□ 0.38
BDNFP23560 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.43■□□□□ 0.38
BDNFP23560 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.43■□□□□ 0.38
BDNFP23560 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.43■□□□□ 0.38
BDNFP23560 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.43■□□□□ 0.38
BDNFP23560 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 FAM86GP-201ENST00000448322 971 ntBASIC17.43■□□□□ 0.38
BDNFP23560 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.43■□□□□ 0.38
BDNFP23560 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 AC069262.1-201ENST00000539058 672 ntBASIC17.43■□□□□ 0.38
BDNFP23560 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.43■□□□□ 0.38
BDNFP23560 AC020765.3-201ENST00000613051 740 ntBASIC17.43■□□□□ 0.38
BDNFP23560 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.43■□□□□ 0.38
BDNFP23560 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
BDNFP23560 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
BDNFP23560 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
BDNFP23560 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.43■□□□□ 0.38
BDNFP23560 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.43■□□□□ 0.38
BDNFP23560 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
BDNFP23560 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
BDNFP23560 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.42■□□□□ 0.38
BDNFP23560 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 AC008677.1-201ENST00000519230 1561 ntBASIC17.42■□□□□ 0.38
BDNFP23560 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.42■□□□□ 0.38
BDNFP23560 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.42■□□□□ 0.38
BDNFP23560 HMGN1P19-201ENST00000436976 333 ntBASIC17.42■□□□□ 0.38
BDNFP23560 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.42■□□□□ 0.38
BDNFP23560 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.42■□□□□ 0.38
BDNFP23560 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.42■□□□□ 0.38
BDNFP23560 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.42■□□□□ 0.38
BDNFP23560 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
BDNFP23560 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
BDNFP23560 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.42■□□□□ 0.38
BDNFP23560 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.41■□□□□ 0.38
BDNFP23560 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.41■□□□□ 0.38
BDNFP23560 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BDNFP23560 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
BDNFP23560 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.41■□□□□ 0.38
BDNFP23560 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.41■□□□□ 0.38
BDNFP23560 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.41■□□□□ 0.38
BDNFP23560 CNN2P2-201ENST00000443536 909 ntBASIC17.41■□□□□ 0.38
BDNFP23560 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.41■□□□□ 0.38
BDNFP23560 CNN2P3-201ENST00000450201 906 ntBASIC17.41■□□□□ 0.38
BDNFP23560 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.41■□□□□ 0.38
BDNFP23560 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.41■□□□□ 0.38
BDNFP23560 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms