RNA–Protein interactions for RNA: ENST00000316097.12

SCAMP4-201, Transcript of secretory carrier membrane protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCAMP4, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-201ENST00000316097 NISCHQ9Y2I1 1504 aa36.95■■■■□ 3.51
SCAMP4-201ENST00000316097 CCDC180Q9P1Z9 1646 aa31.8■■■□□ 2.68
SCAMP4-201ENST00000316097 DCAF8L2P0C7V8 631 aa31.05■■■□□ 2.56
SCAMP4-201ENST00000316097 ZCCHC6Q5VYS8 1495 aaKnown RBP31.04■■■□□ 2.56
SCAMP4-201ENST00000316097 SHROOM4Q9ULL8 1493 aa30.87■■■□□ 2.53
SCAMP4-201ENST00000316097 ABCC9O60706 1549 aa30.43■■■□□ 2.46
SCAMP4-201ENST00000316097 DCAF1Q9Y4B6 1507 aa30.28■■■□□ 2.44
SCAMP4-201ENST00000316097 SUPT5HO00267 1087 aaKnown RBP29.82■■■□□ 2.36
SCAMP4-201ENST00000316097 MYO15BQ96JP2 1530 aa29.76■■■□□ 2.36
SCAMP4-201ENST00000316097 SCRIBQ14160 1630 aa29.72■■■□□ 2.35
SCAMP4-201ENST00000316097 NACADO15069 1562 aa29.68■■■□□ 2.34
SCAMP4-201ENST00000316097 RB1CC1Q8TDY2 1594 aa29.42■■■□□ 2.3
SCAMP4-201ENST00000316097 PABPN1Q86U42 306 aaKnown RBP eCLIP28.95■■■□□ 2.22
SCAMP4-201ENST00000316097 CECR2Q9BXF3 1484 aa28.94■■■□□ 2.22
SCAMP4-201ENST00000316097 UNC13AQ9UPW8 1703 aa28.9■■■□□ 2.22
SCAMP4-201ENST00000316097 RSF1Q96T23 1441 aaPredicted RBP28.89■■■□□ 2.22
SCAMP4-201ENST00000316097 MROH2BQ7Z745 1585 aa28.7■■■□□ 2.18
SCAMP4-201ENST00000316097 BICRAQ9NZM4 1560 aa28.66■■■□□ 2.18
SCAMP4-201ENST00000316097 HRCP23327 699 aa28.52■■■□□ 2.16
SCAMP4-201ENST00000316097 CHIC1Q5VXU3 224 aa28.48■■■□□ 2.15
SCAMP4-201ENST00000316097 WIZO95785 1651 aa28.48■■■□□ 2.15
SCAMP4-201ENST00000316097 BAZ1AQ9NRL2 1556 aaPredicted RBP28.43■■■□□ 2.14
SCAMP4-201ENST00000316097 SMARCA4P51532 1647 aa28.32■■■□□ 2.12
SCAMP4-201ENST00000316097 PCGF6Q9BYE7 350 aa28.14■■■□□ 2.09
SCAMP4-201ENST00000316097 TOP2AP11388 1531 aaKnown RBP27.99■■■□□ 2.07
SCAMP4-201ENST00000316097 PPARGC1BQ86YN6 1023 aaKnown RBP27.94■■■□□ 2.06
SCAMP4-201ENST00000316097 CCDC88BA6NC98 1476 aa27.9■■■□□ 2.06
SCAMP4-201ENST00000316097 ATAD2BQ9ULI0 1458 aa27.88■■■□□ 2.05
SCAMP4-201ENST00000316097 TRIM41Q8WV44 630 aa27.83■■■□□ 2.05
SCAMP4-201ENST00000316097 SMARCA2P51531 1590 aa27.82■■■□□ 2.04
SCAMP4-201ENST00000316097 PEG3Q9GZU2 1588 aa27.8■■■□□ 2.04
SCAMP4-201ENST00000316097 EIF4G1Q04637 1599 aaKnown RBP27.77■■■□□ 2.04
SCAMP4-201ENST00000316097 BAZ1BQ9UIG0 1483 aaKnown RBP27.73■■■□□ 2.03
SCAMP4-201ENST00000316097 LOC105371045A0A1W2PR82 267 aa27.65■■■□□ 2.02
SCAMP4-201ENST00000316097 FAM9AQ8IZU1 332 aaPredicted RBP27.61■■■□□ 2.01
SCAMP4-201ENST00000316097 ABCC8Q09428 1581 aa27.51■■□□□ 1.99
SCAMP4-201ENST00000316097 NCAPD3P42695 1498 aa27.5■■□□□ 1.99
SCAMP4-201ENST00000316097 EHMT2Q96KQ7 1210 aa27.44■■□□□ 1.98
SCAMP4-201ENST00000316097 HMGXB3Q12766 1538 aa27.36■■□□□ 1.97
SCAMP4-201ENST00000316097 CC2D2AQ9P2K1 1620 aa27.35■■□□□ 1.97
SCAMP4-201ENST00000316097 TRIM26Q12899 539 aaPredicted RBP27.34■■□□□ 1.97
SCAMP4-201ENST00000316097 WRNQ14191 1432 aaPredicted RBP eCLIP27.16■■□□□ 1.94
SCAMP4-201ENST00000316097 DNAJC5BQ9UF47 199 aa27.09■■□□□ 1.93
SCAMP4-201ENST00000316097 SOGA1O94964 1423 aa27.08■■□□□ 1.93
SCAMP4-201ENST00000316097 SYNJ1O43426 1573 aa27.04■■□□□ 1.92
SCAMP4-201ENST00000316097 RUSC2Q8N2Y8 1516 aa27.01■■□□□ 1.91
SCAMP4-201ENST00000316097 CFTRP13569 1480 aa27■■□□□ 1.91
SCAMP4-201ENST00000316097 ZEB1P37275 1124 aaPredicted RBP26.99■■□□□ 1.91
SCAMP4-201ENST00000316097 CADPSQ9ULU8 1353 aa26.92■■□□□ 1.9
SCAMP4-201ENST00000316097 PELP1Q8IZL8 1130 aaKnown RBP26.9■■□□□ 1.9
SCAMP4-201ENST00000316097 CSRNP3Q8WYN3 585 aa26.84■■□□□ 1.89
SCAMP4-201ENST00000316097 NESP48681 1621 aa26.81■■□□□ 1.88
SCAMP4-201ENST00000316097 CUX1P39880 1505 aa26.77■■□□□ 1.88
SCAMP4-201ENST00000316097 TOP2BQ02880 1626 aa26.77■■□□□ 1.88
SCAMP4-201ENST00000316097 SCAF1Q9H7N4 1312 aaKnown RBP26.75■■□□□ 1.87
SCAMP4-201ENST00000316097 EEA1Q15075 1411 aa26.67■■□□□ 1.86
SCAMP4-201ENST00000316097 UBTFP17480 764 aaKnown RBP26.66■■□□□ 1.86
SCAMP4-201ENST00000316097 BIVM-ERCC5R4GMW8 1640 aa26.66■■□□□ 1.86
SCAMP4-201ENST00000316097 FANCD2Q9BXW9 1451 aa26.64■■□□□ 1.86
SCAMP4-201ENST00000316097 PRDM2Q13029 1718 aa26.6■■□□□ 1.85
SCAMP4-201ENST00000316097 RANGAP1P46060 587 aaPredicted RBP26.47■■□□□ 1.83
SCAMP4-201ENST00000316097 GOLGA3Q08378 1498 aa26.47■■□□□ 1.83
SCAMP4-201ENST00000316097 TNIKQ9UKE5 1360 aa26.46■■□□□ 1.83
SCAMP4-201ENST00000316097 FGD5Q6ZNL6 1462 aa26.46■■□□□ 1.83
SCAMP4-201ENST00000316097 RAPGEF2Q9Y4G8 1499 aa26.44■■□□□ 1.82
SCAMP4-201ENST00000316097 LAMC3Q9Y6N6 1575 aa26.44■■□□□ 1.82
SCAMP4-201ENST00000316097 CEP162Q5TB80 1403 aa26.44■■□□□ 1.82
SCAMP4-201ENST00000316097 CEP164Q9UPV0 1460 aa26.43■■□□□ 1.82
SCAMP4-201ENST00000316097 KIF27Q86VH2 1401 aa26.4■■□□□ 1.82
SCAMP4-201ENST00000316097 CUX2O14529 1486 aa26.38■■□□□ 1.81
SCAMP4-201ENST00000316097 TOPBP1Q92547 1522 aa26.35■■□□□ 1.81
SCAMP4-201ENST00000316097 RAD54L2Q9Y4B4 1467 aa26.35■■□□□ 1.81
SCAMP4-201ENST00000316097 PDS5BQ9NTI5 1447 aa26.35■■□□□ 1.81
SCAMP4-201ENST00000316097 KIF21BO75037 1637 aa26.34■■□□□ 1.81
SCAMP4-201ENST00000316097 URB2Q14146 1524 aaKnown RBP26.32■■□□□ 1.8
SCAMP4-201ENST00000316097 DNMBPQ6XZF7 1577 aa26.3■■□□□ 1.8
SCAMP4-201ENST00000316097 POLA1P09884 1462 aaPredicted RBP26.28■■□□□ 1.8
SCAMP4-201ENST00000316097 PRXQ9BXM0 1461 aa26.27■■□□□ 1.8
SCAMP4-201ENST00000316097 KIF21AQ7Z4S6 1674 aa26.26■■□□□ 1.79
SCAMP4-201ENST00000316097 TTBK1Q5TCY1 1321 aaPredicted RBP26.26■■□□□ 1.79
SCAMP4-201ENST00000316097 IGF1RP08069 1367 aa26.25■■□□□ 1.79
SCAMP4-201ENST00000316097 ACIN1Q9UKV3 1341 aaKnown RBP26.23■■□□□ 1.79
SCAMP4-201ENST00000316097 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.22■■□□□ 1.79
SCAMP4-201ENST00000316097 NEUROD1Q13562 356 aa26.17■■□□□ 1.78
SCAMP4-201ENST00000316097 CLIP1P30622 1438 aa26.17■■□□□ 1.78
SCAMP4-201ENST00000316097 CCER1Q8TC90 406 aaPredicted RBP26.17■■□□□ 1.78
SCAMP4-201ENST00000316097 TDRD9Q8NDG6 1382 aaKnown RBP26.13■■□□□ 1.77
SCAMP4-201ENST00000316097 CARMIL1Q5VZK9 1371 aa26.11■■□□□ 1.77
SCAMP4-201ENST00000316097 ERICH3Q5RHP9 1530 aa26.11■■□□□ 1.77
SCAMP4-201ENST00000316097 ABCA10Q8WWZ4 1543 aa26.1■■□□□ 1.77
SCAMP4-201ENST00000316097 DIEXFQ68CQ4 756 aaKnown RBP26.01■■□□□ 1.75
SCAMP4-201ENST00000316097 GTF3C3Q9Y5Q9 886 aa26■■□□□ 1.75
SCAMP4-201ENST00000316097 MRC2Q9UBG0 1479 aa25.99■■□□□ 1.75
SCAMP4-201ENST00000316097 CENPBP07199 599 aaPredicted RBP25.97■■□□□ 1.75
SCAMP4-201ENST00000316097 ERCC6Q03468 1493 aa25.96■■□□□ 1.75
SCAMP4-201ENST00000316097 GAPVD1Q14C86 1478 aa25.9■■□□□ 1.74
SCAMP4-201ENST00000316097 VPS8Q8N3P4 1428 aa25.89■■□□□ 1.74
SCAMP4-201ENST00000316097 WDR97A6NE52 1622 aa25.89■■□□□ 1.74
SCAMP4-201ENST00000316097 AQRO60306 1485 aaKnown RBP eCLIP25.89■■□□□ 1.733e-7■■■■■ 45.3
SCAMP4-201ENST00000316097 TARBP1Q13395 1621 aaKnown RBP25.87■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms