Protein–RNA interactions for Protein: Q96L12

CALR3, Calreticulin-3, humanhuman

Known RBP Predictions only

Length 384 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CALR3Q96L12 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CALR3Q96L12 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CALR3Q96L12 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.59■□□□□ 0.41
CALR3Q96L12 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CALR3Q96L12 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CALR3Q96L12 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CALR3Q96L12 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CALR3Q96L12 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CALR3Q96L12 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CALR3Q96L12 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CALR3Q96L12 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CALR3Q96L12 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CALR3Q96L12 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CALR3Q96L12 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CALR3Q96L12 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CALR3Q96L12 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CALR3Q96L12 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.58■□□□□ 0.4
CALR3Q96L12 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.58■□□□□ 0.4
CALR3Q96L12 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.58■□□□□ 0.4
CALR3Q96L12 SLC25A6P2-201ENST00000497974 877 ntBASIC17.58■□□□□ 0.4
CALR3Q96L12 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.58■□□□□ 0.4
CALR3Q96L12 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.58■□□□□ 0.4
CALR3Q96L12 RN7SL371P-201ENST00000578099 267 ntBASIC17.58■□□□□ 0.4
CALR3Q96L12 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
CALR3Q96L12 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.58■□□□□ 0.4
CALR3Q96L12 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CALR3Q96L12 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.58■□□□□ 0.4
CALR3Q96L12 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.58■□□□□ 0.4
CALR3Q96L12 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CALR3Q96L12 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.57■□□□□ 0.4
CALR3Q96L12 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.57■□□□□ 0.4
CALR3Q96L12 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
CALR3Q96L12 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.57■□□□□ 0.4
CALR3Q96L12 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CALR3Q96L12 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.57■□□□□ 0.4
CALR3Q96L12 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.57■□□□□ 0.4
CALR3Q96L12 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.57■□□□□ 0.4
CALR3Q96L12 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.57■□□□□ 0.4
CALR3Q96L12 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.57■□□□□ 0.4
CALR3Q96L12 AC008608.2-201ENST00000606089 416 ntBASIC17.57■□□□□ 0.4
CALR3Q96L12 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CALR3Q96L12 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.57■□□□□ 0.4
CALR3Q96L12 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CALR3Q96L12 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 SLC22A20-204ENST00000530038 1673 ntBASIC17.57■□□□□ 0.4
CALR3Q96L12 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.57■□□□□ 0.4
CALR3Q96L12 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
CALR3Q96L12 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.57■□□□□ 0.4
CALR3Q96L12 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.57■□□□□ 0.4
CALR3Q96L12 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CALR3Q96L12 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.56■□□□□ 0.4
CALR3Q96L12 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CALR3Q96L12 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
CALR3Q96L12 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.56■□□□□ 0.4
CALR3Q96L12 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.56■□□□□ 0.4
CALR3Q96L12 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.56■□□□□ 0.4
CALR3Q96L12 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.56■□□□□ 0.4
CALR3Q96L12 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CALR3Q96L12 MIR648-201ENST00000385046 94 ntBASIC17.56■□□□□ 0.4
CALR3Q96L12 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.56■□□□□ 0.4
CALR3Q96L12 PMS2P1-201ENST00000431037 1228 ntBASIC17.56■□□□□ 0.4
CALR3Q96L12 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC17.56■□□□□ 0.4
CALR3Q96L12 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms