RNA–Protein interactions for RNA: ENST00000406638.6

LSP1-204, Transcript of lymphocyte specific protein 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LSP1, Length 2,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSP1-204ENST00000406638 NISCHQ9Y2I1 1504 aa34.43■■■■□ 3.1
LSP1-204ENST00000406638 CCDC180Q9P1Z9 1646 aa29.64■■■□□ 2.34
LSP1-204ENST00000406638 ZCCHC6Q5VYS8 1495 aaKnown RBP28.94■■■□□ 2.22
LSP1-204ENST00000406638 DCAF8L2P0C7V8 631 aa28.9■■■□□ 2.22
LSP1-204ENST00000406638 SHROOM4Q9ULL8 1493 aa28.78■■■□□ 2.2
LSP1-204ENST00000406638 ABCC9O60706 1549 aa28.43■■■□□ 2.14
LSP1-204ENST00000406638 DCAF1Q9Y4B6 1507 aa28.19■■■□□ 2.1
LSP1-204ENST00000406638 SCRIBQ14160 1630 aa27.74■■■□□ 2.03
LSP1-204ENST00000406638 SUPT5HO00267 1087 aaKnown RBP27.72■■■□□ 2.03
LSP1-204ENST00000406638 MYO15BQ96JP2 1530 aa27.71■■■□□ 2.03
LSP1-204ENST00000406638 NACADO15069 1562 aa27.65■■■□□ 2.02
LSP1-204ENST00000406638 RB1CC1Q8TDY2 1594 aa27.42■■□□□ 1.98
LSP1-204ENST00000406638 HRCP23327 699 aa27.27■■□□□ 1.96
LSP1-204ENST00000406638 PABPN1Q86U42 306 aaKnown RBP eCLIP27.03■■□□□ 1.92
LSP1-204ENST00000406638 CECR2Q9BXF3 1484 aa27.01■■□□□ 1.91
LSP1-204ENST00000406638 UNC13AQ9UPW8 1703 aa27.01■■□□□ 1.91
LSP1-204ENST00000406638 RSF1Q96T23 1441 aaPredicted RBP26.91■■□□□ 1.9
LSP1-204ENST00000406638 PPARGC1BQ86YN6 1023 aaKnown RBP26.83■■□□□ 1.89
LSP1-204ENST00000406638 PCGF6Q9BYE7 350 aa26.8■■□□□ 1.88
LSP1-204ENST00000406638 BICRAQ9NZM4 1560 aa26.78■■□□□ 1.88
LSP1-204ENST00000406638 MROH2BQ7Z745 1585 aa26.78■■□□□ 1.88
LSP1-204ENST00000406638 WIZO95785 1651 aa26.56■■□□□ 1.84
LSP1-204ENST00000406638 BAZ1AQ9NRL2 1556 aaPredicted RBP26.48■■□□□ 1.83
LSP1-204ENST00000406638 CHIC1Q5VXU3 224 aa26.47■■□□□ 1.83
LSP1-204ENST00000406638 SMARCA4P51532 1647 aa26.41■■□□□ 1.82
LSP1-204ENST00000406638 PELP1Q8IZL8 1130 aaKnown RBP26.25■■□□□ 1.79
LSP1-204ENST00000406638 TOP2AP11388 1531 aaKnown RBP26.08■■□□□ 1.77
LSP1-204ENST00000406638 CCDC88BA6NC98 1476 aa26■■□□□ 1.75
LSP1-204ENST00000406638 ATAD2BQ9ULI0 1458 aa26■■□□□ 1.75
LSP1-204ENST00000406638 SMARCA2P51531 1590 aa25.94■■□□□ 1.74
LSP1-204ENST00000406638 LOC105371045A0A1W2PR82 267 aa25.93■■□□□ 1.74
LSP1-204ENST00000406638 EIF4G1Q04637 1599 aaKnown RBP25.93■■□□□ 1.74
LSP1-204ENST00000406638 PEG3Q9GZU2 1588 aa25.92■■□□□ 1.74
LSP1-204ENST00000406638 SCAF1Q9H7N4 1312 aaKnown RBP25.87■■□□□ 1.73
LSP1-204ENST00000406638 BAZ1BQ9UIG0 1483 aaKnown RBP25.85■■□□□ 1.73
LSP1-204ENST00000406638 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
LSP1-204ENST00000406638 TRIM26Q12899 539 aaPredicted RBP25.83■■□□□ 1.72
LSP1-204ENST00000406638 FAM9AQ8IZU1 332 aaPredicted RBP25.68■■□□□ 1.7
LSP1-204ENST00000406638 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
LSP1-204ENST00000406638 NCAPD3P42695 1498 aa25.63■■□□□ 1.69
LSP1-204ENST00000406638 ZEB1P37275 1124 aaPredicted RBP25.56■■□□□ 1.68
LSP1-204ENST00000406638 EHMT2Q96KQ7 1210 aa25.55■■□□□ 1.68
LSP1-204ENST00000406638 CC2D2AQ9P2K1 1620 aa25.55■■□□□ 1.68
LSP1-204ENST00000406638 HMGXB3Q12766 1538 aa25.52■■□□□ 1.68
LSP1-204ENST00000406638 DNAJC5BQ9UF47 199 aa25.38■■□□□ 1.65
LSP1-204ENST00000406638 WRNQ14191 1432 aaPredicted RBP eCLIP25.28■■□□□ 1.64
LSP1-204ENST00000406638 SOGA1O94964 1423 aa25.23■■□□□ 1.63
LSP1-204ENST00000406638 SYNJ1O43426 1573 aa25.23■■□□□ 1.63
LSP1-204ENST00000406638 RUSC2Q8N2Y8 1516 aa25.19■■□□□ 1.62
LSP1-204ENST00000406638 ACIN1Q9UKV3 1341 aaKnown RBP25.19■■□□□ 1.62
LSP1-204ENST00000406638 MYT1Q01538 1121 aa25.17■■□□□ 1.62
LSP1-204ENST00000406638 NEUROD1Q13562 356 aa25.17■■□□□ 1.62
LSP1-204ENST00000406638 CFTRP13569 1480 aa25.17■■□□□ 1.62
LSP1-204ENST00000406638 CADPSQ9ULU8 1353 aa25.09■■□□□ 1.61
LSP1-204ENST00000406638 NESP48681 1621 aa25.06■■□□□ 1.6
LSP1-204ENST00000406638 GTF3C3Q9Y5Q9 886 aa25.04■■□□□ 1.6
LSP1-204ENST00000406638 CUX1P39880 1505 aa24.98■■□□□ 1.59
LSP1-204ENST00000406638 CSRNP3Q8WYN3 585 aa24.93■■□□□ 1.58
LSP1-204ENST00000406638 TOP2BQ02880 1626 aa24.93■■□□□ 1.58
LSP1-204ENST00000406638 FANCD2Q9BXW9 1451 aa24.85■■□□□ 1.57
LSP1-204ENST00000406638 BIVM-ERCC5R4GMW8 1640 aa24.84■■□□□ 1.57
LSP1-204ENST00000406638 CENPBP07199 599 aaPredicted RBP24.83■■□□□ 1.57
LSP1-204ENST00000406638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.83■■□□□ 1.57
LSP1-204ENST00000406638 PRDM2Q13029 1718 aa24.8■■□□□ 1.56
LSP1-204ENST00000406638 DIEXFQ68CQ4 756 aaKnown RBP24.78■■□□□ 1.56
LSP1-204ENST00000406638 UBTFP17480 764 aaKnown RBP24.76■■□□□ 1.55
LSP1-204ENST00000406638 EEA1Q15075 1411 aa24.76■■□□□ 1.55
LSP1-204ENST00000406638 CCER1Q8TC90 406 aaPredicted RBP24.75■■□□□ 1.55
LSP1-204ENST00000406638 FGD5Q6ZNL6 1462 aa24.67■■□□□ 1.54
LSP1-204ENST00000406638 LAMC3Q9Y6N6 1575 aa24.65■■□□□ 1.54
LSP1-204ENST00000406638 RAPGEF2Q9Y4G8 1499 aa24.64■■□□□ 1.53
LSP1-204ENST00000406638 RANGAP1P46060 587 aaPredicted RBP24.64■■□□□ 1.53
LSP1-204ENST00000406638 GOLGA3Q08378 1498 aa24.61■■□□□ 1.53
LSP1-204ENST00000406638 CEP164Q9UPV0 1460 aa24.6■■□□□ 1.53
LSP1-204ENST00000406638 RAD54L2Q9Y4B4 1467 aa24.6■■□□□ 1.53
LSP1-204ENST00000406638 CEP162Q5TB80 1403 aa24.59■■□□□ 1.53
LSP1-204ENST00000406638 TNIKQ9UKE5 1360 aa24.59■■□□□ 1.53
LSP1-204ENST00000406638 TOPBP1Q92547 1522 aa24.58■■□□□ 1.53
LSP1-204ENST00000406638 CUX2O14529 1486 aa24.58■■□□□ 1.53
LSP1-204ENST00000406638 URB2Q14146 1524 aaKnown RBP24.58■■□□□ 1.52
LSP1-204ENST00000406638 KIF27Q86VH2 1401 aa24.55■■□□□ 1.52
LSP1-204ENST00000406638 PDS5BQ9NTI5 1447 aa24.54■■□□□ 1.52
LSP1-204ENST00000406638 KIF21AQ7Z4S6 1674 aa24.53■■□□□ 1.52
LSP1-204ENST00000406638 DNMBPQ6XZF7 1577 aa24.52■■□□□ 1.52
LSP1-204ENST00000406638 POLA1P09884 1462 aaPredicted RBP24.52■■□□□ 1.52
LSP1-204ENST00000406638 KIF21BO75037 1637 aa24.51■■□□□ 1.51
LSP1-204ENST00000406638 YTHDC1Q96MU7 727 aaKnown RBP24.47■■□□□ 1.51
LSP1-204ENST00000406638 PRXQ9BXM0 1461 aa24.46■■□□□ 1.51
LSP1-204ENST00000406638 IGF1RP08069 1367 aa24.45■■□□□ 1.5
LSP1-204ENST00000406638 TTBK1Q5TCY1 1321 aaPredicted RBP24.44■■□□□ 1.5
LSP1-204ENST00000406638 TDRD9Q8NDG6 1382 aaKnown RBP24.37■■□□□ 1.49
LSP1-204ENST00000406638 CLIP1P30622 1438 aa24.33■■□□□ 1.49
LSP1-204ENST00000406638 ABCA10Q8WWZ4 1543 aa24.32■■□□□ 1.48
LSP1-204ENST00000406638 CARMIL1Q5VZK9 1371 aa24.3■■□□□ 1.48
LSP1-204ENST00000406638 ERICH3Q5RHP9 1530 aa24.28■■□□□ 1.48
LSP1-204ENST00000406638 ZNF316A6NFI3 1004 aaPredicted RBP24.25■■□□□ 1.47
LSP1-204ENST00000406638 MRC2Q9UBG0 1479 aa24.25■■□□□ 1.47
LSP1-204ENST00000406638 ERCC6Q03468 1493 aa24.22■■□□□ 1.47
LSP1-204ENST00000406638 WDR97A6NE52 1622 aa24.17■■□□□ 1.46
LSP1-204ENST00000406638 MIER1Q8N108 512 aa24.16■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms