Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.87■□□□□ 0.61
ERCC4Q92889 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.87■□□□□ 0.61
ERCC4Q92889 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.87■□□□□ 0.61
ERCC4Q92889 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.87■□□□□ 0.61
ERCC4Q92889 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
ERCC4Q92889 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
ERCC4Q92889 AC068587.6-202ENST00000641839 5619 ntBASIC18.87■□□□□ 0.61
ERCC4Q92889 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
ERCC4Q92889 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.87■□□□□ 0.61
ERCC4Q92889 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.86■□□□□ 0.61
ERCC4Q92889 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 AL031731.1-201ENST00000642131 2094 ntBASIC18.86■□□□□ 0.61
ERCC4Q92889 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 AC022188.1-201ENST00000620960 1664 ntBASIC18.86■□□□□ 0.61
ERCC4Q92889 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.86■□□□□ 0.61
ERCC4Q92889 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ERCC4Q92889 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
ERCC4Q92889 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
ERCC4Q92889 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.86■□□□□ 0.61
ERCC4Q92889 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
ERCC4Q92889 AL139424.1-201ENST00000607572 797 ntBASIC18.86■□□□□ 0.61
ERCC4Q92889 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.86■□□□□ 0.61
ERCC4Q92889 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
ERCC4Q92889 GGT4P-201ENST00000623672 1708 ntBASIC18.86■□□□□ 0.61
ERCC4Q92889 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
ERCC4Q92889 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
ERCC4Q92889 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.85■□□□□ 0.61
ERCC4Q92889 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 AC002310.6-201ENST00000624451 1377 ntBASIC18.85■□□□□ 0.61
ERCC4Q92889 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
ERCC4Q92889 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
ERCC4Q92889 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.85■□□□□ 0.61
ERCC4Q92889 PAWRP1-201ENST00000451083 565 ntBASIC18.85■□□□□ 0.61
ERCC4Q92889 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
ERCC4Q92889 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
ERCC4Q92889 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.85■□□□□ 0.61
ERCC4Q92889 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.85■□□□□ 0.61
ERCC4Q92889 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.85■□□□□ 0.61
ERCC4Q92889 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.85■□□□□ 0.61
ERCC4Q92889 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.85■□□□□ 0.61
ERCC4Q92889 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.85■□□□□ 0.61
ERCC4Q92889 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.85■□□□□ 0.61
ERCC4Q92889 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC18.85■□□□□ 0.61
ERCC4Q92889 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 MTHFR-217ENST00000641820 1569 ntBASIC18.85■□□□□ 0.61
ERCC4Q92889 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
ERCC4Q92889 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.84■□□□□ 0.61
ERCC4Q92889 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.84■□□□□ 0.61
ERCC4Q92889 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
ERCC4Q92889 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
ERCC4Q92889 TOP3BP1-201ENST00000420768 1380 ntBASIC18.84■□□□□ 0.61
ERCC4Q92889 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 PTCHD3P3-201ENST00000403073 906 ntBASIC18.84■□□□□ 0.61
ERCC4Q92889 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 AC087163.2-201ENST00000457299 853 ntBASIC18.84■□□□□ 0.61
ERCC4Q92889 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.84■□□□□ 0.61
ERCC4Q92889 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.84■□□□□ 0.61
ERCC4Q92889 AP002414.2-201ENST00000591780 3365 ntBASIC18.84■□□□□ 0.61
ERCC4Q92889 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
ERCC4Q92889 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms