Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.28□□□□□ -0.12
COL12A1Q99715 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
COL12A1Q99715 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 AC009113.1-201ENST00000570267 2443 ntBASIC14.28□□□□□ -0.12
COL12A1Q99715 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.28□□□□□ -0.12
COL12A1Q99715 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 RN7SL399P-201ENST00000471648 279 ntBASIC14.28□□□□□ -0.12
COL12A1Q99715 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 SCARNA20.5-201ENST00000516991 142 ntBASIC14.28□□□□□ -0.12
COL12A1Q99715 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.28□□□□□ -0.12
COL12A1Q99715 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.28□□□□□ -0.12
COL12A1Q99715 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
COL12A1Q99715 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
COL12A1Q99715 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL12A1Q99715 ACTG1P3-201ENST00000431775 1114 ntBASIC14.28□□□□□ -0.12
COL12A1Q99715 FTH1P14-201ENST00000482930 551 ntBASIC14.28□□□□□ -0.12
COL12A1Q99715 HIST2H2BC-201ENST00000498492 580 ntBASIC14.28□□□□□ -0.12
COL12A1Q99715 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.28□□□□□ -0.12
COL12A1Q99715 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL12A1Q99715 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL12A1Q99715 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.27□□□□□ -0.12
COL12A1Q99715 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL12A1Q99715 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL12A1Q99715 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL12A1Q99715 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.27□□□□□ -0.12
COL12A1Q99715 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC14.27□□□□□ -0.12
COL12A1Q99715 OLR1-203ENST00000432556 950 ntTSL 2 BASIC14.27□□□□□ -0.12
COL12A1Q99715 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.27□□□□□ -0.12
COL12A1Q99715 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.27□□□□□ -0.12
COL12A1Q99715 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.27□□□□□ -0.12
COL12A1Q99715 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.27□□□□□ -0.12
COL12A1Q99715 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.27□□□□□ -0.12
COL12A1Q99715 CYP2A7P1-201ENST00000595391 815 ntBASIC14.27□□□□□ -0.12
COL12A1Q99715 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL12A1Q99715 AL391069.4-201ENST00000609583 481 ntBASIC14.27□□□□□ -0.12
COL12A1Q99715 AP001350.2-201ENST00000625104 1094 ntBASIC14.27□□□□□ -0.12
COL12A1Q99715 AC008687.7-202ENST00000637404 953 ntBASIC14.27□□□□□ -0.12
COL12A1Q99715 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
COL12A1Q99715 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
COL12A1Q99715 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL12A1Q99715 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.27□□□□□ -0.13
COL12A1Q99715 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC14.27□□□□□ -0.13
COL12A1Q99715 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.27□□□□□ -0.13
COL12A1Q99715 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.27□□□□□ -0.13
COL12A1Q99715 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC14.27□□□□□ -0.13
COL12A1Q99715 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.27□□□□□ -0.13
COL12A1Q99715 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL12A1Q99715 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 TOP3BP1-201ENST00000420768 1380 ntBASIC14.26□□□□□ -0.13
COL12A1Q99715 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
COL12A1Q99715 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.26□□□□□ -0.13
COL12A1Q99715 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.26□□□□□ -0.13
COL12A1Q99715 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.26□□□□□ -0.13
COL12A1Q99715 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC14.26□□□□□ -0.13
COL12A1Q99715 GNRHR2-203ENST00000581100 1187 ntBASIC14.26□□□□□ -0.13
COL12A1Q99715 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL12A1Q99715 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.26□□□□□ -0.13
COL12A1Q99715 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms