Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CDH13P55290 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.2
CDH13P55290 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDH13P55290 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH13P55290 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDH13P55290 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH13P55290 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH13P55290 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CDH13P55290 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH13P55290 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH13P55290 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CDH13P55290 AC011270.2-201ENST00000624293 2550 ntBASIC16.33■□□□□ 0.2
CDH13P55290 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH13P55290 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDH13P55290 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CDH13P55290 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CDH13P55290 SCARNA2-201ENST00000458748 420 ntBASIC16.32■□□□□ 0.2
CDH13P55290 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH13P55290 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.32■□□□□ 0.2
CDH13P55290 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH13P55290 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.32■□□□□ 0.2
CDH13P55290 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
CDH13P55290 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH13P55290 GGT4P-201ENST00000623672 1708 ntBASIC16.32■□□□□ 0.2
CDH13P55290 MTHFR-217ENST00000641820 1569 ntBASIC16.32■□□□□ 0.2
CDH13P55290 AF228730.7-201ENST00000641842 219 ntBASIC16.32■□□□□ 0.2
CDH13P55290 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH13P55290 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
CDH13P55290 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH13P55290 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.31■□□□□ 0.2
CDH13P55290 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 AC131009.4-201ENST00000624048 1740 ntBASIC16.31■□□□□ 0.2
CDH13P55290 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 KRT8P39-201ENST00000396270 1433 ntBASIC16.31■□□□□ 0.2
CDH13P55290 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH13P55290 PMS2P1-201ENST00000431037 1228 ntBASIC16.31■□□□□ 0.2
CDH13P55290 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.31■□□□□ 0.2
CDH13P55290 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH13P55290 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CDH13P55290 AC012313.10-201ENST00000623509 926 ntBASIC16.31■□□□□ 0.2
CDH13P55290 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH13P55290 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDH13P55290 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH13P55290 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH13P55290 SLC22A20-204ENST00000530038 1673 ntBASIC16.3■□□□□ 0.2
CDH13P55290 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH13P55290 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH13P55290 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH13P55290 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH13P55290 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms