Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
USP42Q9H9J4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP42Q9H9J4 MIR638-201ENST00000385237 100 ntBASIC30.73■■■□□ 2.51
USP42Q9H9J4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
USP42Q9H9J4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.73■■■□□ 2.51
USP42Q9H9J4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.73■■■□□ 2.51
USP42Q9H9J4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP42Q9H9J4 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
USP42Q9H9J4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
USP42Q9H9J4 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP42Q9H9J4 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
USP42Q9H9J4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
USP42Q9H9J4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC30.71■■■□□ 2.51
USP42Q9H9J4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.71■■■□□ 2.51
USP42Q9H9J4 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
USP42Q9H9J4 AC021242.3-201ENST00000607598 1377 ntBASIC30.7■■■□□ 2.51
USP42Q9H9J4 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC30.7■■■□□ 2.51
USP42Q9H9J4 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP42Q9H9J4 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.5
USP42Q9H9J4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
USP42Q9H9J4 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP42Q9H9J4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.69■■■□□ 2.5
USP42Q9H9J4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USP42Q9H9J4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP42Q9H9J4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP42Q9H9J4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.68■■■□□ 2.5
USP42Q9H9J4 AL449106.1-201ENST00000608517 1980 ntBASIC30.68■■■□□ 2.5
USP42Q9H9J4 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP42Q9H9J4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP42Q9H9J4 TSPY9P-201ENST00000440215 945 ntBASIC30.67■■■□□ 2.5
USP42Q9H9J4 TSPY11P-201ENST00000442607 1045 ntBASIC30.67■■■□□ 2.5
USP42Q9H9J4 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
USP42Q9H9J4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.66■■■□□ 2.5
USP42Q9H9J4 AC120024.1-201ENST00000562672 995 ntBASIC30.66■■■□□ 2.5
USP42Q9H9J4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.66■■■□□ 2.5
USP42Q9H9J4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC30.66■■■□□ 2.5
USP42Q9H9J4 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP42Q9H9J4 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC30.65■■■□□ 2.5
USP42Q9H9J4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.65■■■□□ 2.5
USP42Q9H9J4 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
USP42Q9H9J4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
USP42Q9H9J4 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
USP42Q9H9J4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP42Q9H9J4 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP42Q9H9J4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.64■■■□□ 2.5
USP42Q9H9J4 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.64■■■□□ 2.5
USP42Q9H9J4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.63■■■□□ 2.49
USP42Q9H9J4 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP42Q9H9J4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 AC131281.2-201ENST00000520478 145 ntBASIC30.62■■■□□ 2.49
USP42Q9H9J4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
USP42Q9H9J4 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC30.62■■■□□ 2.49
USP42Q9H9J4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP42Q9H9J4 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
USP42Q9H9J4 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
USP42Q9H9J4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP42Q9H9J4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.59■■■□□ 2.49
USP42Q9H9J4 AL139246.5-201ENST00000606645 996 ntBASIC30.59■■■□□ 2.49
USP42Q9H9J4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.59■■■□□ 2.49
USP42Q9H9J4 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC30.58■■■□□ 2.49
USP42Q9H9J4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC30.58■■■□□ 2.49
USP42Q9H9J4 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
USP42Q9H9J4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC30.57■■■□□ 2.48
USP42Q9H9J4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 AC092028.1-203ENST00000608262 953 ntBASIC30.57■■■□□ 2.48
USP42Q9H9J4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP42Q9H9J4 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
USP42Q9H9J4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.56■■■□□ 2.48
USP42Q9H9J4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP42Q9H9J4 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC30.56■■■□□ 2.48
USP42Q9H9J4 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.56■■■□□ 2.48
USP42Q9H9J4 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms