Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC135731.1-201ENST00000569415 2548 ntBASIC29.32■■■□□ 2.28
USP48Q86UV5 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC29.31■■■□□ 2.28
USP48Q86UV5 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
USP48Q86UV5 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
USP48Q86UV5 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
USP48Q86UV5 MIR4787-201ENST00000607364 84 ntBASIC29.31■■■□□ 2.28
USP48Q86UV5 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC29.31■■■□□ 2.28
USP48Q86UV5 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
USP48Q86UV5 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC29.3■■■□□ 2.28
USP48Q86UV5 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC29.3■■■□□ 2.28
USP48Q86UV5 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC29.3■■■□□ 2.28
USP48Q86UV5 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC29.3■■■□□ 2.28
USP48Q86UV5 LONRF2P2-201ENST00000439212 571 ntBASIC29.3■■■□□ 2.28
USP48Q86UV5 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC29.3■■■□□ 2.28
USP48Q86UV5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
USP48Q86UV5 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
USP48Q86UV5 MIR638-201ENST00000385237 100 ntBASIC29.29■■■□□ 2.28
USP48Q86UV5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC29.29■■■□□ 2.28
USP48Q86UV5 KRT125P-201ENST00000546827 989 ntBASIC29.29■■■□□ 2.28
USP48Q86UV5 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
USP48Q86UV5 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
USP48Q86UV5 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC29.28■■■□□ 2.28
USP48Q86UV5 RPS2P7-201ENST00000447334 885 ntBASIC29.28■■■□□ 2.28
USP48Q86UV5 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC29.28■■■□□ 2.28
USP48Q86UV5 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
USP48Q86UV5 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
USP48Q86UV5 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
USP48Q86UV5 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC29.27■■■□□ 2.28
USP48Q86UV5 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC29.27■■■□□ 2.28
USP48Q86UV5 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
USP48Q86UV5 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC29.27■■■□□ 2.28
USP48Q86UV5 UNC93B8-201ENST00000511903 705 ntBASIC29.27■■■□□ 2.28
USP48Q86UV5 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC29.27■■■□□ 2.28
USP48Q86UV5 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
USP48Q86UV5 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC29.27■■■□□ 2.28
USP48Q86UV5 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
USP48Q86UV5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
USP48Q86UV5 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC29.26■■■□□ 2.27
USP48Q86UV5 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
USP48Q86UV5 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP48Q86UV5 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP48Q86UV5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP48Q86UV5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC29.25■■■□□ 2.27
USP48Q86UV5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
USP48Q86UV5 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
USP48Q86UV5 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
USP48Q86UV5 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
USP48Q86UV5 AL449106.1-201ENST00000608517 1980 ntBASIC29.24■■■□□ 2.27
USP48Q86UV5 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC29.23■■■□□ 2.27
USP48Q86UV5 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
USP48Q86UV5 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
USP48Q86UV5 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
USP48Q86UV5 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
USP48Q86UV5 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
USP48Q86UV5 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC29.23■■■□□ 2.27
USP48Q86UV5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC29.23■■■□□ 2.27
USP48Q86UV5 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
USP48Q86UV5 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
USP48Q86UV5 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.22■■■□□ 2.27
USP48Q86UV5 BX664725.1-201ENST00000438252 379 ntBASIC29.22■■■□□ 2.27
USP48Q86UV5 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
USP48Q86UV5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
USP48Q86UV5 KRT16P3-201ENST00000439127 1283 ntBASIC29.21■■■□□ 2.27
USP48Q86UV5 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
USP48Q86UV5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC29.2■■■□□ 2.26
USP48Q86UV5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC29.2■■■□□ 2.26
USP48Q86UV5 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC29.2■■■□□ 2.26
USP48Q86UV5 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
USP48Q86UV5 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
USP48Q86UV5 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
USP48Q86UV5 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC29.19■■■□□ 2.26
USP48Q86UV5 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC29.19■■■□□ 2.26
USP48Q86UV5 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
USP48Q86UV5 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC29.19■■■□□ 2.26
USP48Q86UV5 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
USP48Q86UV5 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
USP48Q86UV5 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USP48Q86UV5 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
USP48Q86UV5 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
USP48Q86UV5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USP48Q86UV5 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC29.17■■■□□ 2.26
USP48Q86UV5 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USP48Q86UV5 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
USP48Q86UV5 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
USP48Q86UV5 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC29.16■■■□□ 2.26
USP48Q86UV5 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
USP48Q86UV5 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
USP48Q86UV5 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
USP48Q86UV5 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
USP48Q86UV5 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC29.15■■■□□ 2.26
USP48Q86UV5 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC29.15■■■□□ 2.26
USP48Q86UV5 RALB-208ENST00000631312 311 ntTSL 5 BASIC29.15■■■□□ 2.26
USP48Q86UV5 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
USP48Q86UV5 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC29.15■■■□□ 2.26
USP48Q86UV5 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
USP48Q86UV5 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
USP48Q86UV5 AL139246.5-201ENST00000606645 996 ntBASIC29.14■■■□□ 2.26
USP48Q86UV5 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC29.14■■■□□ 2.25
USP48Q86UV5 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USP48Q86UV5 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms