Protein–RNA interactions for Protein: P12956

XRCC6, X-ray repair cross-complementing protein 6, humanhuman

Known RBP eCLIP

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC6P12956 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.282e-19■■■■□ 23.3
XRCC6P12956 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.8■■□□□ 1.082e-19■■■■□ 23.3
XRCC6P12956 ANKRD10-206ENST00000465753 997 ntTSL 1 (best)20.69■□□□□ 0.92e-19■■■■□ 23.3
XRCC6P12956 ANKRD10-209ENST00000489973 745 ntTSL 39.94□□□□□ -0.822e-19■■■■□ 23.3
XRCC6P12956 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC8.64□□□□□ -1.037e-7■■■■□ 23.3
XRCC6P12956 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC6.64□□□□□ -1.352e-19■■■■□ 23.3
XRCC6P12956 ANKRD10-207ENST00000475809 446 ntTSL 23.79□□□□□ -1.82e-19■■■■□ 23.3
XRCC6P12956 CKB-205ENST00000553878 856 ntTSL 232.72■■■□□ 2.831e-6■■■■□ 23.3
XRCC6P12956 CKB-208ENST00000554426 775 ntTSL 529■■■□□ 2.231e-6■■■■□ 23.3
XRCC6P12956 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.761e-6■■■■□ 23.3
XRCC6P12956 CKB-204ENST00000553652 1239 ntTSL 519.77■□□□□ 0.761e-6■■■■□ 23.3
XRCC6P12956 ERCC6L2-201ENST00000288985 4564 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.043e-31■■■■□ 23.2
XRCC6P12956 ERCC6L2-206ENST00000466840 3586 ntTSL 1 (best)6.99□□□□□ -1.293e-31■■■■□ 23.2
XRCC6P12956 RNA5SP289-201ENST00000362332 137 ntBASIC2.61□□□□□ -1.993e-31■■■■□ 23.2
XRCC6P12956 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.877e-9■■■■□ 23.2
XRCC6P12956 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.95■■□□□ 1.12e-6■■■■□ 23.1
XRCC6P12956 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.72e-6■■■■□ 23.1
XRCC6P12956 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC19.16■□□□□ 0.662e-6■■■■□ 23.1
XRCC6P12956 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.94■□□□□ 0.622e-6■■■■□ 23.1
XRCC6P12956 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.23□□□□□ -1.413e-6■■■■□ 23.1
XRCC6P12956 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.99□□□□□ -1.453e-6■■■■□ 23.1
XRCC6P12956 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.032e-7■■■■□ 23.1
XRCC6P12956 GK-210ENST00000481024 2401 ntTSL 216.43■□□□□ 0.224e-6■■■■□ 23.1
XRCC6P12956 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.194e-6■■■■□ 23.1
XRCC6P12956 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC16.16■□□□□ 0.184e-6■■■■□ 23.1
XRCC6P12956 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.124e-6■■■■□ 23.1
XRCC6P12956 GK-207ENST00000427190 4573 ntTSL 5 BASIC13.97□□□□□ -0.174e-6■■■■□ 23.1
XRCC6P12956 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.7□□□□□ -1.661e-8■■■■□ 23.1
XRCC6P12956 RPS3-206ENST00000526248 771 ntTSL 517.64■□□□□ 0.416e-7■■■■□ 23.1
XRCC6P12956 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.45■□□□□ 0.226e-7■■■■□ 23.1
XRCC6P12956 RPS3-217ENST00000531188 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.076e-7■■■■□ 23.1
XRCC6P12956 RPS3-209ENST00000527446 1306 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.126e-7■■■■□ 23.1
XRCC6P12956 RPS3-216ENST00000530721 796 ntTSL 314.26□□□□□ -0.136e-7■■■■□ 23.1
XRCC6P12956 RPS3-218ENST00000532872 737 ntTSL 314.26□□□□□ -0.136e-7■■■■□ 23.1
XRCC6P12956 RPS3-202ENST00000422465 903 ntTSL 212.45□□□□□ -0.426e-7■■■■□ 23.1
XRCC6P12956 RPS3-205ENST00000525933 1307 ntTSL 511.29□□□□□ -0.66e-7■■■■□ 23.1
XRCC6P12956 RPS3-210ENST00000528439 473 ntTSL 311.2□□□□□ -0.626e-7■■■■□ 23.1
XRCC6P12956 RPS3-219ENST00000534440 564 ntTSL 2 BASIC11.2□□□□□ -0.626e-7■■■■□ 23.1
XRCC6P12956 RPS3-204ENST00000525690 421 ntTSL 311.2□□□□□ -0.626e-7■■■■□ 23.1
XRCC6P12956 RPS3-215ENST00000530170 531 ntTSL 511.08□□□□□ -0.646e-7■■■■□ 23.1
XRCC6P12956 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC19.11■□□□□ 0.652e-7■■■■□ 23
XRCC6P12956 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.622e-7■■■■□ 23
XRCC6P12956 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC17.33■□□□□ 0.362e-7■■■■□ 23
XRCC6P12956 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC17.32■□□□□ 0.362e-7■■■■□ 23
XRCC6P12956 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.232e-7■■■■□ 23
XRCC6P12956 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC15.81■□□□□ 0.122e-7■■■■□ 23
XRCC6P12956 ACIN1-213ENST00000555053 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.052e-7■■■■□ 23
XRCC6P12956 ACIN1-223ENST00000605057 4474 ntTSL 1 (best) BASIC13.64□□□□□ -0.232e-7■■■■□ 23
XRCC6P12956 ACIN1-206ENST00000473758 3540 ntTSL 1 (best)13.62□□□□□ -0.232e-7■■■■□ 23
XRCC6P12956 ACIN1-217ENST00000555566 734 ntTSL 313.45□□□□□ -0.262e-7■■■■□ 23
XRCC6P12956 BCR-204ENST00000427791 771 ntTSL 1 (best)14.44□□□□□ -0.13e-6■■■■□ 23
XRCC6P12956 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC17.85■□□□□ 0.453e-6■■■■□ 23
XRCC6P12956 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC16.72■□□□□ 0.273e-6■■■■□ 23
XRCC6P12956 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC16.68■□□□□ 0.263e-6■■■■□ 23
XRCC6P12956 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.253e-6■■■■□ 23
XRCC6P12956 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.253e-6■■■■□ 23
XRCC6P12956 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC15.89■□□□□ 0.133e-6■■■■□ 23
XRCC6P12956 RPS6KC1-204ENST00000490299 5154 ntTSL 1 (best)4.27□□□□□ -1.733e-6■■■■□ 23
XRCC6P12956 DYRK1A-209ENST00000608928 483 ntTSL 524.05■■□□□ 1.441e-21■■■■□ 23
XRCC6P12956 DYRK1A-206ENST00000455097 338 ntTSL 1 (best)9.78□□□□□ -0.841e-21■■■■□ 23
XRCC6P12956 DYRK1A-205ENST00000426672 519 ntTSL 54.7□□□□□ -1.661e-21■■■■□ 23
XRCC6P12956 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC20.7■□□□□ 0.94e-10■■■■□ 22.9
XRCC6P12956 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.374e-10■■■■□ 22.9
XRCC6P12956 HS2ST1-203ENST00000591456 540 ntTSL 46.43□□□□□ -1.384e-10■■■■□ 22.9
XRCC6P12956 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC18.46■□□□□ 0.551e-6■■■■□ 22.8
XRCC6P12956 P4HA1-201ENST00000263556 2844 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.141e-6■■■■□ 22.8
XRCC6P12956 P4HA1-204ENST00000394890 2844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.141e-6■■■■□ 22.8
XRCC6P12956 P4HA1-202ENST00000307116 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.481e-6■■■■□ 22.8
XRCC6P12956 P4HA1-203ENST00000373008 2727 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.481e-6■■■■□ 22.8
XRCC6P12956 EPB41-210ENST00000482464 675 ntTSL 219.63■□□□□ 0.732e-10■■■■□ 22.8
XRCC6P12956 EPB41-207ENST00000373800 2853 ntTSL 1 (best) BASIC12.68□□□□□ -0.382e-10■■■■□ 22.8
XRCC6P12956 EPB41-203ENST00000349460 3029 ntTSL 1 (best) BASIC12.6□□□□□ -0.392e-10■■■■□ 22.8
XRCC6P12956 EPB41-202ENST00000347529 2676 ntTSL 1 (best) BASIC11.11□□□□□ -0.632e-10■■■■□ 22.8
XRCC6P12956 EPB41-204ENST00000356093 5857 ntTSL 5 BASIC10.72□□□□□ -0.692e-10■■■■□ 22.8
XRCC6P12956 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC9.02□□□□□ -0.972e-10■■■■□ 22.8
XRCC6P12956 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.58■□□□□ 0.722e-7■■■■□ 22.8
XRCC6P12956 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC19.11■□□□□ 0.652e-7■■■■□ 22.8
XRCC6P12956 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC19.08■□□□□ 0.642e-7■■■■□ 22.8
XRCC6P12956 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC19.03■□□□□ 0.642e-7■■■■□ 22.8
XRCC6P12956 KDM6A-214ENST00000621147 2876 ntTSL 1 (best) BASIC15.97■□□□□ 0.152e-7■■■■□ 22.8
XRCC6P12956 KDM6A-201ENST00000377967 5438 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.272e-7■■■■□ 22.8
XRCC6P12956 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.384e-7■■■■□ 22.7
XRCC6P12956 PDE3A-202ENST00000542675 685 ntTSL 313.01□□□□□ -0.334e-7■■■■□ 22.7
XRCC6P12956 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC15.03■□□□□ -05e-9■■■■□ 22.6
XRCC6P12956 PRRC2B-201ENST00000320547 4950 ntTSL 213.31□□□□□ -0.285e-9■■■■□ 22.6
XRCC6P12956 PRRC2B-202ENST00000357304 11042 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.335e-9■■■■□ 22.6
XRCC6P12956 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.136e-7■■■■□ 22.6
XRCC6P12956 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC26.22■■□□□ 1.794e-13■■■■□ 22.6
XRCC6P12956 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.07■□□□□ 0.964e-13■■■■□ 22.6
XRCC6P12956 AGAP1-214ENST00000635100 2478 ntTSL 518.99■□□□□ 0.636e-7■■■■□ 22.6
XRCC6P12956 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.27■□□□□ 0.522e-9■■■■□ 22.6
XRCC6P12956 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.246e-7■■■■□ 22.6
XRCC6P12956 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.12e-9■■■■□ 22.6
XRCC6P12956 DAD1-204ENST00000538631 441 ntTSL 2 BASIC10.83□□□□□ -0.682e-9■■■■□ 22.6
XRCC6P12956 DAD1-203ENST00000535847 591 ntTSL 210.1□□□□□ -0.792e-9■■■■□ 22.6
XRCC6P12956 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.88□□□□□ -1.793e-19■■■■□ 22.6
XRCC6P12956 SCRIB-207ENST00000531942 421 ntTSL 224.23■■□□□ 1.473e-6■■■■□ 22.6
XRCC6P12956 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 13e-6■■■■□ 22.6
XRCC6P12956 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.693e-6■■■■□ 22.6
XRCC6P12956 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.663e-6■■■■□ 22.6
Retrieved 100 of 6,788 protein–RNA pairs in 99.6 ms