Protein–RNA interactions for Protein: P12956

XRCC6, X-ray repair cross-complementing protein 6, humanhuman

Known RBP eCLIP

Length 609 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC6P12956 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC15.15■□□□□ 0.023e-27■■■■■ 650.4
XRCC6P12956 SNORD3B-1-201ENST00000577988 758 ntBASIC15.59■□□□□ 0.092e-54■■■■■ 248.2
XRCC6P12956 SNORD3B-1-203ENST00000631292 217 nt12.52□□□□□ -0.412e-54■■■■■ 248.2
XRCC6P12956 SNORD3B-1-202ENST00000617128 218 nt12.36□□□□□ -0.432e-54■■■■■ 248.2
XRCC6P12956 FP671120.1-201ENST00000623664 2498 ntTSL 2 BASIC15.15■□□□□ 0.025e-9■■■■■ 103.3
XRCC6P12956 PAMR1-208ENST00000621476 2842 ntTSL 2 BASIC14.03□□□□□ -0.161e-10■■■■■ 94.8
XRCC6P12956 BCR-207ENST00000463770 168 ntTSL 1 (best)16.51■□□□□ 0.231e-35■■■■■ 93.9
XRCC6P12956 BCR-214ENST00000487679 231 ntTSL 1 (best)9.18□□□□□ -0.941e-35■■■■■ 93.9
XRCC6P12956 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.141e-13■■■■■ 82.9
XRCC6P12956 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.921e-13■■■■■ 82.9
XRCC6P12956 ERCC1-204ENST00000423698 3119 ntTSL 2 BASIC14.82□□□□□ -0.044e-15■■■■■ 82
XRCC6P12956 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.213e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-217ENST00000568597 592 ntTSL 222.62■■□□□ 1.213e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.46■□□□□ 0.713e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-219ENST00000568963 480 ntTSL 419.46■□□□□ 0.713e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.41■□□□□ 0.73e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC17.82■□□□□ 0.443e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-215ENST00000567523 1839 ntTSL 217.74■□□□□ 0.433e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-220ENST00000569076 557 ntTSL 416.84■□□□□ 0.293e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-211ENST00000566184 493 ntTSL 415.32■□□□□ 0.043e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-216ENST00000567740 1051 ntTSL 213.14□□□□□ -0.313e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-201ENST00000220531 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.63e-14■■■■■ 80.9
XRCC6P12956 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC7.32□□□□□ -1.243e-14■■■■■ 80.9
XRCC6P12956 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.615e-15■■■■■ 80.1
XRCC6P12956 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.435e-15■■■■■ 80.1
XRCC6P12956 ATG9A-220ENST00000475339 812 ntTSL 215.25■□□□□ 0.035e-15■■■■■ 80.1
XRCC6P12956 ATG9A-203ENST00000409033 3701 ntTSL 1 (best)14.96□□□□□ -0.015e-15■■■■■ 80.1
XRCC6P12956 ATG9A-202ENST00000396761 3799 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.195e-15■■■■■ 80.1
XRCC6P12956 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.483e-14■■■■■ 75.4
XRCC6P12956 DECR2-216ENST00000633348 762 ntTSL 323.23■■□□□ 1.313e-14■■■■■ 75.4
XRCC6P12956 DECR2-217ENST00000633923 509 ntTSL 321.5■■□□□ 1.033e-14■■■■■ 75.4
XRCC6P12956 DECR2-206ENST00000445291 1078 ntTSL 521.32■■□□□ 13e-14■■■■■ 75.4
XRCC6P12956 DECR2-204ENST00000437024 1738 ntTSL 220.95■□□□□ 0.943e-14■■■■■ 75.4
XRCC6P12956 DECR2-205ENST00000439661 1618 ntTSL 220.94■□□□□ 0.943e-14■■■■■ 75.4
XRCC6P12956 NME4-205ENST00000444498 1111 ntTSL 320.91■□□□□ 0.943e-14■■■■■ 75.4
XRCC6P12956 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.01■□□□□ 0.793e-14■■■■■ 75.4
XRCC6P12956 DECR2-210ENST00000465166 702 ntTSL 218.38■□□□□ 0.533e-14■■■■■ 75.4
XRCC6P12956 DECR2-209ENST00000461947 1017 ntTSL 517.52■□□□□ 0.43e-14■■■■■ 75.4
XRCC6P12956 DECR2-215ENST00000633025 561 ntTSL 516.17■□□□□ 0.183e-14■■■■■ 75.4
XRCC6P12956 DECR2-214ENST00000632744 247 ntTSL 55.7□□□□□ -1.53e-14■■■■■ 75.4
XRCC6P12956 ZCCHC7-203ENST00000461038 2793 ntTSL 1 (best)19.71■□□□□ 0.754e-15■■■■■ 75.3
XRCC6P12956 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.54e-15■■■■■ 75.3
XRCC6P12956 ZCCHC7-206ENST00000488607 884 ntTSL 26.55□□□□□ -1.364e-15■■■■■ 75.3
XRCC6P12956 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.654e-15■■■■■ 75.3
XRCC6P12956 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.633e-13■■■■■ 72.3
XRCC6P12956 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.563e-13■■■■■ 72.3
XRCC6P12956 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.34□□□□□ -1.873e-13■■■■■ 72.3
XRCC6P12956 RYR2-202ENST00000366574 16562 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.462e-15■■■■■ 71.3
XRCC6P12956 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.272e-15■■■■■ 71.3
XRCC6P12956 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.263e-12■■■■■ 66.7
XRCC6P12956 INTS13-202ENST00000536232 460 ntTSL 34.99□□□□□ -1.613e-12■■■■■ 66.7
XRCC6P12956 BCR-212ENST00000479188 658 ntTSL 414.96□□□□□ -0.013e-8■■■■■ 65.3
XRCC6P12956 POLR2A-209ENST00000617998 6751 ntTSL 1 (best)12.28□□□□□ -0.441e-10■■■■■ 63.4
XRCC6P12956 VTRNA1-1-201ENST00000363120 99 ntBASIC3.18□□□□□ -1.93e-39■■■■■ 63.2
XRCC6P12956 NR2F2-AS1-202ENST00000557863 515 ntTSL 317.87■□□□□ 0.451e-57■■■■■ 61.5
XRCC6P12956 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC29.93■■■□□ 2.381e-7■■■■■ 61.2
XRCC6P12956 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.6■■■□□ 2.331e-7■■■■■ 61.2
XRCC6P12956 CLK2-205ENST00000476983 1885 ntTSL 1 (best)22.09■■□□□ 1.131e-7■■■■■ 61.2
XRCC6P12956 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.781e-7■■■■■ 61.2
XRCC6P12956 CLK2-207ENST00000497188 2702 ntTSL 212.98□□□□□ -0.331e-7■■■■■ 61.2
XRCC6P12956 CLK2-204ENST00000471047 701 ntTSL 310.97□□□□□ -0.651e-7■■■■■ 61.2
XRCC6P12956 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC13.21□□□□□ -0.291e-57■■■■■ 60.5
XRCC6P12956 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC12.07□□□□□ -0.481e-57■■■■■ 60.5
XRCC6P12956 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC10.5□□□□□ -0.731e-57■■■■■ 60.5
XRCC6P12956 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC8.71□□□□□ -1.021e-57■■■■■ 60.5
XRCC6P12956 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC4.83□□□□□ -1.641e-57■■■■■ 60.5
XRCC6P12956 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.92e-10■■■■■ 57.5
XRCC6P12956 SNORD1A-201ENST00000364968 72 ntBASIC1.72□□□□□ -2.138e-19■■■■■ 57
XRCC6P12956 ATG9A-215ENST00000446716 5245 ntTSL 219.77■□□□□ 0.758e-7■■■■■ 56.5
XRCC6P12956 UBE2I-216ENST00000567383 538 ntTSL 419.25■□□□□ 0.671e-10■■■■■ 56.5
XRCC6P12956 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.825e-7■■■■■ 55.3
XRCC6P12956 BRD2-213ENST00000495733 3404 ntTSL 219.17■□□□□ 0.665e-7■■■■■ 55.3
XRCC6P12956 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.475e-7■■■■■ 55.3
XRCC6P12956 BRD2-219ENST00000607833 2338 ntAPPRIS ALT2 TSL 1 (best)17.1■□□□□ 0.335e-7■■■■■ 55.3
XRCC6P12956 BRD2-212ENST00000482914 4834 ntTSL 1 (best)16.85■□□□□ 0.295e-7■■■■■ 55.3
XRCC6P12956 BRD2-206ENST00000456339 887 ntTSL 416.68■□□□□ 0.265e-7■■■■■ 55.3
XRCC6P12956 BRD2-205ENST00000449085 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.055e-7■■■■■ 55.3
XRCC6P12956 BRD2-204ENST00000449025 3210 ntAPPRIS ALT2 TSL 1 (best)14.74□□□□□ -0.055e-7■■■■■ 55.3
XRCC6P12956 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.445e-7■■■■■ 55.3
XRCC6P12956 DCAF6-206ENST00000455334 796 ntTSL 521.39■■□□□ 1.016e-12■■■■■ 55.2
XRCC6P12956 DCAF6-205ENST00000450548 724 ntTSL 320.45■□□□□ 0.866e-12■■■■■ 55.2
XRCC6P12956 DCAF6-209ENST00000470919 827 ntTSL 25.29□□□□□ -1.566e-12■■■■■ 55.2
XRCC6P12956 TAF1D-205ENST00000526015 1735 ntTSL 1 (best)22.07■■□□□ 1.123e-9■■■■■ 54.6
XRCC6P12956 TAF1D-201ENST00000323981 2540 ntTSL 217.25■□□□□ 0.353e-9■■■■■ 54.6
XRCC6P12956 TAF1D-204ENST00000525928 1710 ntTSL 27.83□□□□□ -1.163e-9■■■■■ 54.6
XRCC6P12956 TAF1D-222ENST00000546088 1728 ntTSL 37.11□□□□□ -1.273e-9■■■■■ 54.6
XRCC6P12956 TAF1D-210ENST00000529435 1011 ntTSL 56.3□□□□□ -1.43e-9■■■■■ 54.6
XRCC6P12956 TAF1D-215ENST00000530769 4358 ntTSL 26.2□□□□□ -1.423e-9■■■■■ 54.6
XRCC6P12956 TAF1D-219ENST00000534079 656 ntTSL 26.19□□□□□ -1.423e-9■■■■■ 54.6
XRCC6P12956 TAF1D-213ENST00000529900 1066 ntTSL 24.96□□□□□ -1.623e-9■■■■■ 54.6
XRCC6P12956 TAF1D-202ENST00000393259 547 ntTSL 34.9□□□□□ -1.633e-9■■■■■ 54.6
XRCC6P12956 TAF1D-221ENST00000540232 483 ntTSL 34.59□□□□□ -1.673e-9■■■■■ 54.6
XRCC6P12956 EIF4G1-224ENST00000444861 2384 ntTSL 1 (best)28.37■■■□□ 2.135e-9■■■■■ 54.4
XRCC6P12956 EIF4G1-226ENST00000450424 2658 ntTSL 523.26■■□□□ 1.315e-9■■■■■ 54.4
XRCC6P12956 EIF4G1-210ENST00000421110 2755 ntTSL 520.51■□□□□ 0.875e-9■■■■■ 54.4
XRCC6P12956 EIF4G1-213ENST00000426123 2907 ntTSL 220.4■□□□□ 0.865e-9■■■■■ 54.4
XRCC6P12956 EIF4G1-208ENST00000413967 2808 ntTSL 219.29■□□□□ 0.685e-9■■■■■ 54.4
XRCC6P12956 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.16■□□□□ 0.665e-9■■■■■ 54.4
XRCC6P12956 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.585e-9■■■■■ 54.4
XRCC6P12956 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.05■□□□□ 0.485e-9■■■■■ 54.4
Retrieved 100 of 6,788 protein–RNA pairs in 39 ms