Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 RBM17P3-201ENST00000417687 1192 ntBASIC12.58□□□□□ -0.4
LINC00477Q96M19 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 AC106795.1-205ENST00000512851 1056 ntBASIC12.58□□□□□ -0.4
LINC00477Q96M19 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 PNN-202ENST00000553331 656 ntTSL 3 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 AL589182.2-201ENST00000619332 1049 ntBASIC12.58□□□□□ -0.4
LINC00477Q96M19 AL139288.1-201ENST00000623748 933 ntBASIC12.58□□□□□ -0.4
LINC00477Q96M19 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.58□□□□□ -0.4
LINC00477Q96M19 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LINC00477Q96M19 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 MTHFR-217ENST00000641820 1569 ntBASIC12.57□□□□□ -0.4
LINC00477Q96M19 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 PCDH8P1-201ENST00000428983 2773 ntBASIC12.57□□□□□ -0.4
LINC00477Q96M19 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC12.57□□□□□ -0.4
LINC00477Q96M19 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LINC00477Q96M19 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LINC00477Q96M19 ALOX12P2-203ENST00000570921 1945 ntBASIC12.56□□□□□ -0.4
LINC00477Q96M19 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms