RNA–Protein interactions for RNA: ENST00000554684.5

PPP4R3A-205, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PPP4R3A, Length 4,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-205ENST00000554684 NISCHQ9Y2I1 1504 aa31.02■■■□□ 2.56
PPP4R3A-205ENST00000554684 DCAF8L2P0C7V8 631 aa30.34■■■□□ 2.45
PPP4R3A-205ENST00000554684 SHROOM4Q9ULL8 1493 aa28.6■■■□□ 2.17
PPP4R3A-205ENST00000554684 SUPT5HO00267 1087 aaKnown RBP28.27■■■□□ 2.12
PPP4R3A-205ENST00000554684 EHMT2Q96KQ7 1210 aa27.14■■□□□ 1.94
PPP4R3A-205ENST00000554684 ABCC9O60706 1549 aa27.12■■□□□ 1.93
PPP4R3A-205ENST00000554684 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.85
PPP4R3A-205ENST00000554684 FAM9AQ8IZU1 332 aaPredicted RBP26.58■■□□□ 1.85
PPP4R3A-205ENST00000554684 RANGAP1P46060 587 aaPredicted RBP26.1■■□□□ 1.77
PPP4R3A-205ENST00000554684 TRIM41Q8WV44 630 aa26.04■■□□□ 1.76
PPP4R3A-205ENST00000554684 TTBK1Q5TCY1 1321 aaPredicted RBP25.93■■□□□ 1.74
PPP4R3A-205ENST00000554684 ZCCHC6Q5VYS8 1495 aaKnown RBP25.7■■□□□ 1.7
PPP4R3A-205ENST00000554684 CCDC180Q9P1Z9 1646 aa25.68■■□□□ 1.7
PPP4R3A-205ENST00000554684 CHIC1Q5VXU3 224 aa25.65■■□□□ 1.7
PPP4R3A-205ENST00000554684 SCRIBQ14160 1630 aa25.6■■□□□ 1.69
PPP4R3A-205ENST00000554684 PCGF6Q9BYE7 350 aa25.55■■□□□ 1.68
PPP4R3A-205ENST00000554684 UBTFP17480 764 aaKnown RBP25.55■■□□□ 1.68
PPP4R3A-205ENST00000554684 ATP1B4Q9UN42 357 aaPredicted RBP25.48■■□□□ 1.67
PPP4R3A-205ENST00000554684 APLP2Q06481 763 aa25.44■■□□□ 1.66
PPP4R3A-205ENST00000554684 LOC105371045A0A1W2PR82 267 aa25.38■■□□□ 1.65
PPP4R3A-205ENST00000554684 PPARGC1BQ86YN6 1023 aaKnown RBP25.37■■□□□ 1.65
PPP4R3A-205ENST00000554684 RB1CC1Q8TDY2 1594 aa25.04■■□□□ 1.6
PPP4R3A-205ENST00000554684 NACADO15069 1562 aa24.86■■□□□ 1.57
PPP4R3A-205ENST00000554684 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.78■■□□□ 1.56
PPP4R3A-205ENST00000554684 FBLN2P98095 1184 aa24.78■■□□□ 1.56
PPP4R3A-205ENST00000554684 HNRNPUL2Q1KMD3 747 aaKnown RBP24.78■■□□□ 1.56
PPP4R3A-205ENST00000554684 CECR2Q9BXF3 1484 aa24.7■■□□□ 1.54
PPP4R3A-205ENST00000554684 TRIM26Q12899 539 aaPredicted RBP24.67■■□□□ 1.54
PPP4R3A-205ENST00000554684 ITGAEP38570 1179 aa24.65■■□□□ 1.54
PPP4R3A-205ENST00000554684 CCER1Q8TC90 406 aaPredicted RBP24.64■■□□□ 1.53
PPP4R3A-205ENST00000554684 RSF1Q96T23 1441 aaPredicted RBP24.63■■□□□ 1.53
PPP4R3A-205ENST00000554684 DCAF1Q9Y4B6 1507 aa24.61■■□□□ 1.53
PPP4R3A-205ENST00000554684 P3H3Q8IVL6 736 aa24.49■■□□□ 1.51
PPP4R3A-205ENST00000554684 ARID3CA6NKF2 412 aa24.44■■□□□ 1.5
PPP4R3A-205ENST00000554684 ZEB1P37275 1124 aaPredicted RBP24.39■■□□□ 1.5
PPP4R3A-205ENST00000554684 HRCP23327 699 aa24.39■■□□□ 1.49
PPP4R3A-205ENST00000554684 CSRNP3Q8WYN3 585 aa24.37■■□□□ 1.49
PPP4R3A-205ENST00000554684 MYT1LQ9UL68 1186 aa24.32■■□□□ 1.48
PPP4R3A-205ENST00000554684 BAZ1BQ9UIG0 1483 aaKnown RBP24.27■■□□□ 1.48
PPP4R3A-205ENST00000554684 MYO15BQ96JP2 1530 aa24.27■■□□□ 1.48
PPP4R3A-205ENST00000554684 MROH2BQ7Z745 1585 aa24.23■■□□□ 1.47
PPP4R3A-205ENST00000554684 BAZ1AQ9NRL2 1556 aaPredicted RBP24.14■■□□□ 1.45
PPP4R3A-205ENST00000554684 FAM50AQ14320 339 aaKnown RBP24.05■■□□□ 1.44
PPP4R3A-205ENST00000554684 CHMP7Q8WUX9 453 aaPredicted RBP23.87■■□□□ 1.41
PPP4R3A-205ENST00000554684 WRNQ14191 1432 aaPredicted RBP eCLIP23.87■■□□□ 1.41
PPP4R3A-205ENST00000554684 WIZO95785 1651 aa23.86■■□□□ 1.41
PPP4R3A-205ENST00000554684 CCDC88BA6NC98 1476 aa23.84■■□□□ 1.41
PPP4R3A-205ENST00000554684 ERCC6Q03468 1493 aa23.81■■□□□ 1.4
PPP4R3A-205ENST00000554684 ZNF777Q9ULD5 760 aaPredicted RBP23.75■■□□□ 1.39
PPP4R3A-205ENST00000554684 ATAD2BQ9ULI0 1458 aa23.71■■□□□ 1.39
PPP4R3A-205ENST00000554684 CNGB1Q14028 1251 aaPredicted RBP23.66■■□□□ 1.38
PPP4R3A-205ENST00000554684 TRIM52Q96A61 297 aa23.66■■□□□ 1.38
PPP4R3A-205ENST00000554684 YTHDC1Q96MU7 727 aaKnown RBP23.66■■□□□ 1.38
PPP4R3A-205ENST00000554684 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
PPP4R3A-205ENST00000554684 POLR3GLQ9BT43 218 aa23.63■■□□□ 1.37
PPP4R3A-205ENST00000554684 DNAJC5BQ9UF47 199 aa23.63■■□□□ 1.37
PPP4R3A-205ENST00000554684 SMARCA2P51531 1590 aa23.62■■□□□ 1.37
PPP4R3A-205ENST00000554684 SOGA1O94964 1423 aa23.62■■□□□ 1.37
PPP4R3A-205ENST00000554684 CENPBP07199 599 aaPredicted RBP23.57■■□□□ 1.36
PPP4R3A-205ENST00000554684 NEUROD1Q13562 356 aa23.56■■□□□ 1.36
PPP4R3A-205ENST00000554684 SMARCA4P51532 1647 aa23.56■■□□□ 1.36
PPP4R3A-205ENST00000554684 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
PPP4R3A-205ENST00000554684 CADPSQ9ULU8 1353 aa23.49■■□□□ 1.35
PPP4R3A-205ENST00000554684 KIF27Q86VH2 1401 aa23.48■■□□□ 1.35
PPP4R3A-205ENST00000554684 CUX2O14529 1486 aa23.46■■□□□ 1.35
PPP4R3A-205ENST00000554684 CEP162Q5TB80 1403 aa23.46■■□□□ 1.35
PPP4R3A-205ENST00000554684 CLIP1P30622 1438 aa23.44■■□□□ 1.34
PPP4R3A-205ENST00000554684 KCNH8Q96L42 1107 aa23.44■■□□□ 1.34
PPP4R3A-205ENST00000554684 TOP2AP11388 1531 aaKnown RBP23.44■■□□□ 1.34
PPP4R3A-205ENST00000554684 EEA1Q15075 1411 aa23.44■■□□□ 1.34
PPP4R3A-205ENST00000554684 CHIC2Q9UKJ5 165 aa23.43■■□□□ 1.34
PPP4R3A-205ENST00000554684 NPM1P06748 294 aaKnown RBP eCLIP23.42■■□□□ 1.34
PPP4R3A-205ENST00000554684 CDK11AQ9UQ88 783 aaPredicted RBP23.42■■□□□ 1.34
PPP4R3A-205ENST00000554684 PDS5BQ9NTI5 1447 aa23.39■■□□□ 1.34
PPP4R3A-205ENST00000554684 EIF4G1Q04637 1599 aaKnown RBP23.39■■□□□ 1.33
PPP4R3A-205ENST00000554684 ZNF326Q5BKZ1 582 aaKnown RBP23.38■■□□□ 1.33
PPP4R3A-205ENST00000554684 GOLGA3Q08378 1498 aa23.38■■□□□ 1.33
PPP4R3A-205ENST00000554684 PLPPR3Q6T4P5 718 aa23.37■■□□□ 1.33
PPP4R3A-205ENST00000554684 DIEXFQ68CQ4 756 aaKnown RBP23.36■■□□□ 1.33
PPP4R3A-205ENST00000554684 TNIKQ9UKE5 1360 aa23.32■■□□□ 1.32
PPP4R3A-205ENST00000554684 CARMIL1Q5VZK9 1371 aa23.31■■□□□ 1.32
PPP4R3A-205ENST00000554684 MTUS2Q5JR59 1369 aa23.25■■□□□ 1.31
PPP4R3A-205ENST00000554684 CEP164Q9UPV0 1460 aa23.24■■□□□ 1.31
PPP4R3A-205ENST00000554684 RUSC2Q8N2Y8 1516 aa23.2■■□□□ 1.3
PPP4R3A-205ENST00000554684 BICRAQ9NZM4 1560 aa23.2■■□□□ 1.3
PPP4R3A-205ENST00000554684 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
PPP4R3A-205ENST00000554684 NESP48681 1621 aa23.18■■□□□ 1.3
PPP4R3A-205ENST00000554684 PELP1Q8IZL8 1130 aaKnown RBP23.18■■□□□ 1.3
PPP4R3A-205ENST00000554684 NCAPD3P42695 1498 aa23.17■■□□□ 1.3
PPP4R3A-205ENST00000554684 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.16■■□□□ 1.32e-6■□□□□ 9.7
PPP4R3A-205ENST00000554684 SLC4A1APQ9BWU0 796 aaKnown RBP23.15■■□□□ 1.3
PPP4R3A-205ENST00000554684 PLEKHD1A6NEE1 506 aa23.11■■□□□ 1.29
PPP4R3A-205ENST00000554684 CC2D2AQ9P2K1 1620 aa23.1■■□□□ 1.29
PPP4R3A-205ENST00000554684 SENP3Q9H4L4 574 aaPredicted RBP23.1■■□□□ 1.29
PPP4R3A-205ENST00000554684 RRP7BPQ9NSQ0 103 aa23.09■■□□□ 1.29
PPP4R3A-205ENST00000554684 ZNF316A6NFI3 1004 aaPredicted RBP23.07■■□□□ 1.28
PPP4R3A-205ENST00000554684 CHGAP10645 457 aaKnown RBP23.02■■□□□ 1.28
PPP4R3A-205ENST00000554684 RAD54L2Q9Y4B4 1467 aa23.02■■□□□ 1.28
PPP4R3A-205ENST00000554684 TSPY4P0CV99 314 aa23■■□□□ 1.27
PPP4R3A-205ENST00000554684 TSPY10P0CW01 314 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms