RNA–Protein interactions for RNA: ENST00000531405.5

SSSCA1-206, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2 BASIC

Gene SSSCA1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-206ENST00000531405 NISCHQ9Y2I1 1504 aa46.45■■■■■ 5.03
SSSCA1-206ENST00000531405 ABCC9O60706 1549 aa41.82■■■■■ 4.29
SSSCA1-206ENST00000531405 CCDC180Q9P1Z9 1646 aa41.78■■■■■ 4.28
SSSCA1-206ENST00000531405 RB1CC1Q8TDY2 1594 aa39.76■■■■□ 3.95
SSSCA1-206ENST00000531405 NACADO15069 1562 aa39.44■■■■□ 3.9
SSSCA1-206ENST00000531405 DNAJC5BQ9UF47 199 aa39.26■■■■□ 3.88
SSSCA1-206ENST00000531405 DCAF8L2P0C7V8 631 aa39.22■■■■□ 3.87
SSSCA1-206ENST00000531405 UNC13AQ9UPW8 1703 aa39.06■■■■□ 3.84
SSSCA1-206ENST00000531405 PABPN1Q86U42 306 aaKnown RBP eCLIP38.89■■■■□ 3.82
SSSCA1-206ENST00000531405 MYO15BQ96JP2 1530 aa38.82■■■■□ 3.8
SSSCA1-206ENST00000531405 BICRAQ9NZM4 1560 aa38.65■■■■□ 3.78
SSSCA1-206ENST00000531405 ZCCHC6Q5VYS8 1495 aaKnown RBP38.49■■■■□ 3.75
SSSCA1-206ENST00000531405 DCAF1Q9Y4B6 1507 aa38.33■■■■□ 3.73
SSSCA1-206ENST00000531405 SCRIBQ14160 1630 aa38.1■■■■□ 3.69
SSSCA1-206ENST00000531405 SHROOM4Q9ULL8 1493 aa37.99■■■■□ 3.67
SSSCA1-206ENST00000531405 CC2D2AQ9P2K1 1620 aa37.81■■■■□ 3.64
SSSCA1-206ENST00000531405 EIF4G1Q04637 1599 aaKnown RBP37.68■■■■□ 3.62
SSSCA1-206ENST00000531405 CECR2Q9BXF3 1484 aa37.64■■■■□ 3.62
SSSCA1-206ENST00000531405 NCAPD3P42695 1498 aa36.37■■■■□ 3.41
SSSCA1-206ENST00000531405 SMARCA4P51532 1647 aa36.31■■■■□ 3.4
SSSCA1-206ENST00000531405 ATAD2BQ9ULI0 1458 aa36.29■■■■□ 3.4
SSSCA1-206ENST00000531405 SMARCA2P51531 1590 aa36.19■■■■□ 3.38
SSSCA1-206ENST00000531405 HMGXB3Q12766 1538 aa36.15■■■■□ 3.38
SSSCA1-206ENST00000531405 ERCC6Q03468 1493 aa36.08■■■■□ 3.37
SSSCA1-206ENST00000531405 BAZ1AQ9NRL2 1556 aaPredicted RBP36.06■■■■□ 3.36
SSSCA1-206ENST00000531405 DNAJC5Q9H3Z4 198 aa36.03■■■■□ 3.36
SSSCA1-206ENST00000531405 CUX2O14529 1486 aa36■■■■□ 3.35
SSSCA1-206ENST00000531405 BAZ1BQ9UIG0 1483 aaKnown RBP35.95■■■■□ 3.35
SSSCA1-206ENST00000531405 NESP48681 1621 aa35.94■■■■□ 3.34
SSSCA1-206ENST00000531405 PEG3Q9GZU2 1588 aa35.9■■■■□ 3.34
SSSCA1-206ENST00000531405 MROH2BQ7Z745 1585 aa35.83■■■■□ 3.33
SSSCA1-206ENST00000531405 LAMC3Q9Y6N6 1575 aa35.63■■■■□ 3.29
SSSCA1-206ENST00000531405 THOC2Q8NI27 1593 aaKnown RBP35.6■■■■□ 3.29
SSSCA1-206ENST00000531405 KIF21AQ7Z4S6 1674 aa35.56■■■■□ 3.28
SSSCA1-206ENST00000531405 WIZO95785 1651 aa35.47■■■■□ 3.27
SSSCA1-206ENST00000531405 PDS5BQ9NTI5 1447 aa35.36■■■■□ 3.25
SSSCA1-206ENST00000531405 CADPSQ9ULU8 1353 aa35.26■■■■□ 3.24
SSSCA1-206ENST00000531405 MRC2Q9UBG0 1479 aa35.1■■■■□ 3.21
SSSCA1-206ENST00000531405 WDR62O43379 1518 aa35.05■■■■□ 3.2
SSSCA1-206ENST00000531405 RSF1Q96T23 1441 aaPredicted RBP35.01■■■■□ 3.2
SSSCA1-206ENST00000531405 CEP164Q9UPV0 1460 aa34.96■■■■□ 3.19
SSSCA1-206ENST00000531405 TOP2AP11388 1531 aaKnown RBP34.93■■■■□ 3.18
SSSCA1-206ENST00000531405 FANCD2Q9BXW9 1451 aa34.91■■■■□ 3.18
SSSCA1-206ENST00000531405 CFTRP13569 1480 aa34.87■■■■□ 3.17
SSSCA1-206ENST00000531405 PRDM2Q13029 1718 aa34.72■■■■□ 3.15
SSSCA1-206ENST00000531405 URB2Q14146 1524 aaKnown RBP34.66■■■■□ 3.14
SSSCA1-206ENST00000531405 CCDC88BA6NC98 1476 aa34.52■■■■□ 3.12
SSSCA1-206ENST00000531405 TRIM41Q8WV44 630 aa34.5■■■■□ 3.11
SSSCA1-206ENST00000531405 OSCARQ8IYS5 282 aa34.31■■■■□ 3.08
SSSCA1-206ENST00000531405 TOPBP1Q92547 1522 aa34.26■■■■□ 3.08
SSSCA1-206ENST00000531405 ZNF608Q9ULD9 1512 aaPredicted RBP34.25■■■■□ 3.07
SSSCA1-206ENST00000531405 IFT140Q96RY7 1462 aa34.23■■■■□ 3.07
SSSCA1-206ENST00000531405 DNMBPQ6XZF7 1577 aa34.15■■■■□ 3.06
SSSCA1-206ENST00000531405 EIF4G3O43432 1585 aaKnown RBP34.11■■■■□ 3.05
SSSCA1-206ENST00000531405 ABCC8Q09428 1581 aa34.11■■■■□ 3.05
SSSCA1-206ENST00000531405 RIMBP3CA6NJZ7 1639 aa34.03■■■■□ 3.04
SSSCA1-206ENST00000531405 RIMBP3BA6NNM3 1639 aa34.03■■■■□ 3.04
SSSCA1-206ENST00000531405 RIMBP3Q9UFD9 1639 aa34.03■■■■□ 3.04
SSSCA1-206ENST00000531405 TARBP1Q13395 1621 aaKnown RBP34.01■■■■□ 3.04
SSSCA1-206ENST00000531405 CHD1O14646 1710 aa33.94■■■■□ 3.02
SSSCA1-206ENST00000531405 AQRO60306 1485 aaKnown RBP eCLIP33.91■■■■□ 3.024e-6■■■■■ 31
SSSCA1-206ENST00000531405 POLA1P09884 1462 aaPredicted RBP33.9■■■■□ 3.02
SSSCA1-206ENST00000531405 ARHGEF11O15085 1522 aa33.85■■■■□ 3.01
SSSCA1-206ENST00000531405 RAD54L2Q9Y4B4 1467 aa33.8■■■■□ 3
SSSCA1-206ENST00000531405 SOGA1O94964 1423 aa33.7■■■□□ 2.99
SSSCA1-206ENST00000531405 FGD5Q6ZNL6 1462 aa33.69■■■□□ 2.98
SSSCA1-206ENST00000531405 CUX1P39880 1505 aa33.68■■■□□ 2.98
SSSCA1-206ENST00000531405 FBLN2P98095 1184 aa33.67■■■□□ 2.98
SSSCA1-206ENST00000531405 TDRD9Q8NDG6 1382 aaKnown RBP33.67■■■□□ 2.98
SSSCA1-206ENST00000531405 WDR97A6NE52 1622 aa33.59■■■□□ 2.97
SSSCA1-206ENST00000531405 SNAPC4Q5SXM2 1469 aa33.57■■■□□ 2.97
SSSCA1-206ENST00000531405 CYB5RLQ6IPT4 315 aa33.56■■■□□ 2.96
SSSCA1-206ENST00000531405 ARAP1Q96P48 1450 aa33.52■■■□□ 2.96
SSSCA1-206ENST00000531405 PBRM1Q86U86 1689 aa33.46■■■□□ 2.95
SSSCA1-206ENST00000531405 MAGI1Q96QZ7 1491 aaPredicted RBP33.44■■■□□ 2.94
SSSCA1-206ENST00000531405 CLASP1Q7Z460 1538 aa33.43■■■□□ 2.94
SSSCA1-206ENST00000531405 GRIN2BQ13224 1484 aa33.43■■■□□ 2.94
SSSCA1-206ENST00000531405 SUPT5HO00267 1087 aaKnown RBP33.42■■■□□ 2.94
SSSCA1-206ENST00000531405 SYNJ1O43426 1573 aa33.39■■■□□ 2.94
SSSCA1-206ENST00000531405 CHMP7Q8WUX9 453 aaPredicted RBP33.38■■■□□ 2.93
SSSCA1-206ENST00000531405 SYNJ2O15056 1496 aa33.33■■■□□ 2.93
SSSCA1-206ENST00000531405 GAPVD1Q14C86 1478 aa33.32■■■□□ 2.92
SSSCA1-206ENST00000531405 ABCA5Q8WWZ7 1642 aa33.3■■■□□ 2.92
SSSCA1-206ENST00000531405 ABCA10Q8WWZ4 1543 aa33.28■■■□□ 2.92
SSSCA1-206ENST00000531405 TRHP20396 242 aaPredicted RBP33.21■■■□□ 2.91
SSSCA1-206ENST00000531405 BIVM-ERCC5R4GMW8 1640 aa33.15■■■□□ 2.9
SSSCA1-206ENST00000531405 TOP2BQ02880 1626 aa33.12■■■□□ 2.89
SSSCA1-206ENST00000531405 WRNQ14191 1432 aaPredicted RBP eCLIP33.1■■■□□ 2.89
SSSCA1-206ENST00000531405 ADAMTS12P58397 1594 aa33.05■■■□□ 2.88
SSSCA1-206ENST00000531405 GRIN2AQ12879 1464 aa33.03■■■□□ 2.88
SSSCA1-206ENST00000531405 CEP170Q5SW79 1584 aa32.97■■■□□ 2.87
SSSCA1-206ENST00000531405 ERCC6L2Q5T890 1561 aa32.96■■■□□ 2.87
SSSCA1-206ENST00000531405 NUP160Q12769 1436 aa32.89■■■□□ 2.86
SSSCA1-206ENST00000531405 FHAD1B1AJZ9 1412 aa32.86■■■□□ 2.85
SSSCA1-206ENST00000531405 ERICH3Q5RHP9 1530 aa32.86■■■□□ 2.85
SSSCA1-206ENST00000531405 SHROOM2Q13796 1616 aa32.84■■■□□ 2.85
SSSCA1-206ENST00000531405 RUSC2Q8N2Y8 1516 aa32.6■■■□□ 2.81
SSSCA1-206ENST00000531405 PRG4Q92954 1404 aaPredicted RBP32.59■■■□□ 2.81
SSSCA1-206ENST00000531405 KIF13AQ9H1H9 1805 aa32.52■■■□□ 2.8
SSSCA1-206ENST00000531405 JPH4Q96JJ6 628 aa32.52■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms