Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
MMP28Q9H239 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.89□□□□□ -0.03
MMP28Q9H239 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
MMP28Q9H239 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 UPK3BP1-201ENST00000428678 509 ntBASIC14.89□□□□□ -0.03
MMP28Q9H239 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.89□□□□□ -0.03
MMP28Q9H239 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.89□□□□□ -0.03
MMP28Q9H239 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
MMP28Q9H239 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.89□□□□□ -0.03
MMP28Q9H239 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
MMP28Q9H239 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
MMP28Q9H239 HLA-A-202ENST00000376806 1854 ntBASIC14.89□□□□□ -0.03
MMP28Q9H239 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.89□□□□□ -0.03
MMP28Q9H239 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
MMP28Q9H239 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
MMP28Q9H239 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.88□□□□□ -0.03
MMP28Q9H239 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
MMP28Q9H239 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.88□□□□□ -0.03
MMP28Q9H239 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.88□□□□□ -0.03
MMP28Q9H239 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 SPDYE15P-201ENST00000424157 909 ntBASIC14.88□□□□□ -0.03
MMP28Q9H239 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 DDX43P3-201ENST00000441064 443 ntBASIC14.88□□□□□ -0.03
MMP28Q9H239 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.88□□□□□ -0.03
MMP28Q9H239 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.88□□□□□ -0.03
MMP28Q9H239 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 AC091076.1-201ENST00000610741 619 ntBASIC14.88□□□□□ -0.03
MMP28Q9H239 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
MMP28Q9H239 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.88□□□□□ -0.03
MMP28Q9H239 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
MMP28Q9H239 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
MMP28Q9H239 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
MMP28Q9H239 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
MMP28Q9H239 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
MMP28Q9H239 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.87□□□□□ -0.03
MMP28Q9H239 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms