Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDH1Q08174 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.21■□□□□ 0.19
PCDH1Q08174 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
PCDH1Q08174 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PCDH1Q08174 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PCDH1Q08174 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
PCDH1Q08174 AC018695.7-201ENST00000624587 2492 ntBASIC16.21■□□□□ 0.18
PCDH1Q08174 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
PCDH1Q08174 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.21■□□□□ 0.18
PCDH1Q08174 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PCDH1Q08174 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
PCDH1Q08174 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDH1Q08174 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDH1Q08174 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDH1Q08174 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 PMS2P1-201ENST00000431037 1228 ntBASIC16.2■□□□□ 0.18
PCDH1Q08174 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.2■□□□□ 0.18
PCDH1Q08174 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.2■□□□□ 0.18
PCDH1Q08174 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.2■□□□□ 0.18
PCDH1Q08174 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
PCDH1Q08174 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PCDH1Q08174 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PCDH1Q08174 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 AL512652.2-201ENST00000625156 1716 ntBASIC16.19■□□□□ 0.18
PCDH1Q08174 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.19■□□□□ 0.18
PCDH1Q08174 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 MRPL20P1-201ENST00000400819 433 ntBASIC16.19■□□□□ 0.18
PCDH1Q08174 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 AL031284.1-201ENST00000419297 478 ntBASIC16.19■□□□□ 0.18
PCDH1Q08174 FAM185BP-201ENST00000443595 716 ntBASIC16.19■□□□□ 0.18
PCDH1Q08174 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.19■□□□□ 0.18
PCDH1Q08174 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.19■□□□□ 0.18
PCDH1Q08174 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
PCDH1Q08174 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.19■□□□□ 0.18
PCDH1Q08174 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PCDH1Q08174 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms