Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 NCF1C-201ENST00000438382 1427 ntBASIC17.47■□□□□ 0.39
ATG4AQ8WYN0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 AL671710.1-201ENST00000610245 2349 ntBASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 PRYP5-201ENST00000451909 266 ntBASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 AL022326.1-202ENST00000641533 845 ntBASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ATG4AQ8WYN0 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
ATG4AQ8WYN0 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 SNX33P1-201ENST00000592116 1762 ntBASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
ATG4AQ8WYN0 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 AC013467.2-201ENST00000605472 835 ntBASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.44■□□□□ 0.38
ATG4AQ8WYN0 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms